Difference between revisions of "Software and Utilities"

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See [[:Category:SWUG-TCons]] for all new meetings
See [[:Category:SWUG-TCons]] for all new meetings

Revision as of 12:28, 23 June 2011

The purpose of the Software and Utilities group (SWUG) is to support both the GOC and the user community with technical, software, bioinformatics and computer-science related matters. In addition, this group will help drive the GOC through the research and provision of new computational technologies and methodologies relating to ontologies and ontology-based data analysis. This group is responsible for creating, clarifying and extending the common model that underpins all of GO. Ontology development tools are necessary for the Ontology Development group to perform its function. In addition, the Annotation Outreach group and wider community need means of exploring and utilizing GO and existing annotations. This group complements all the other groups.

Software and Utilities group summary


See Category:SWUG-TCons for all new meetings

  • Visualisation meeting, 2007-08-16. No notes, demo only
  • March 14 2007 -

Past Meetings:

Forthcoming meetings:

Schedule to be decided


Mail List

Send to mailing list:

To subscribe, email software-group-request@geneontology.org with 'subscribe' in the body of the email







All software-and-utilities pages on the wiki should go in the wikispace SWUG (SoftWare Utilities Group)




General Interest

Internal interest



Collaboration with PantherDB

GO database and go-perl

Main page: http://www.geneontology.org/GO.database.shtml

  • gp2protein report This is a script run "peridically" to cross-check gp2protein files submitted by mods.


Main page: http://www.sequenceontology.org


CVS http://song.cvs.sourceforge.net/song/software/scripts/miSO

browser http://song.sf.net/SO_view/index.html

Cross-products in SO

SO contains cross-product definitions of many composite terms. See SO Cross Products for the methodology.



Reference Genome Software Prototype

Sohel Merchant has created a prototype as support for the Reference Genome Annotation Project. Currently the project data is managed by means of a google spreadsheet that is difficult to use. The new database and interface will allow the administrator to enter new target genes and for the model organism curators to call their orthologs and to track curation progress of each gene. (For more on the Reference Genome Annotation Project: http://gocwiki.geneontology.org/index.php/Reference_Genome_Annotation_Project )

To access the prototype: http://rails-dev.bioinformatics.northwestern.edu:24000