Software and Utilities
The purpose of the Software and Utilities group (SWUG) is to support both the GOC and the user community with technical, software, bioinformatics and computer-science related matters. In addition, this group will help drive the GOC through the research and provision of new computational technologies and methodologies relating to ontologies and ontology-based data analysis. This group is responsible for creating, clarifying and extending the common model that underpins all of GO. Ontology development tools are necessary for the Ontology Development group to perform its function. In addition, the Annotation Outreach group and wider community need means of exploring and utilizing GO and existing annotations. This group complements all the other groups.
Software and Utilities group summary
Meetings
- March 14 2007 -
Past Meetings:
Forthcoming meetings:
Schedule to be decided
Mail List
Send to mailing list:
To subsscribe, email software-group-request@geneontology.org with 'subscribe' in the body of the email
Resources
- http://gocwiki.geneontology.org/index.php/GO_FAQ#Software_and_tools
- http://wiki.geneontology.org/index.php/Example_Queries
- http://amigo.geneontology.org/dev
Wiki
All software-and-utilities pages on the wiki should go in the wikispace SWUG (SoftWare Utilities Group)
Projects
OBO-Edit
Technical articles:
- Intersections in the OBO-Edit datamodel
- OBO Parser - Getting Started
- Reasoner Overview
- OBO-Edit Datamodel Interfaces Diagram
AmiGO
GO database and go-perl
Main page: http://www.godatabase.org
go-dev: http://www.godatabase.org/dev/
go-dev Code Org : Thoughts on the organization of go-dev source.
GoDB loading Proposal for refactoring go-full loads
SO
Main page: http://www.sequenceontology.org
MiSO
CVS http://song.cvs.sourceforge.net/song/software/scripts/miSO
browser http://song.sf.net/SO_view/index.html
Cross-products in SO
SO contains cross-product definitions of many composite terms. See SO Cross Products for the methodology.