User contributions for Mi
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13 March 2024
- 19:1619:16, 13 March 2024 diff hist +535 13 March 2024 PAINT Conference Call →Agenda current
- 18:3918:39, 13 March 2024 diff hist +37 13 March 2024 PAINT Conference Call →GO meeting presentation
- 18:3918:39, 13 March 2024 diff hist +781 13 March 2024 PAINT Conference Call →"Do not annotate" terms
- 12:5312:53, 13 March 2024 diff hist +2 13 March 2024 PAINT Conference Call →Do not annotate terms
- 12:0412:04, 13 March 2024 diff hist +50 13 March 2024 PAINT Conference Call No edit summary
- 11:1211:12, 13 March 2024 diff hist +74 13 March 2024 PAINT Conference Call No edit summary
6 March 2024
- 21:0221:02, 6 March 2024 diff hist +1,313 N 13 March 2024 PAINT Conference Call Created page with "==Present== ==Agenda== ===Taxon Constraint Curation === We are correcting the taxon constraint violations in the current PAINT data using this [https://docs.google.com/spreadsheets/d/1fm2AVtvnhJoa7BUaDpg9Fc-w9cHmyzZrFZsylAUuUhw/edit?usp=sharing Google sheet file]. The PAINT tool implemented a taxon constraint check a few years ago, so it is highly unlikely that TCVs are introduced during the curation. There two likely sources for the TCVs. First, these are really old..."
- 20:3920:39, 6 March 2024 diff hist +42 PAINT Conference Calls →PAINT Conference Call Agenda and Minutes 2024 current
14 February 2024
- 13:1213:12, 14 February 2024 diff hist +44 14 Feb 2024 PAINT Conference Call →Present current
13 February 2024
- 16:0916:09, 13 February 2024 diff hist +792 14 Feb 2024 PAINT Conference Call →New certificates
- 14:3414:34, 13 February 2024 diff hist +284 14 Feb 2024 PAINT Conference Call →New certificates
- 14:2914:29, 13 February 2024 diff hist +347 N 14 Feb 2024 PAINT Conference Call Created page with "==Present== ==Agenda== ===New certificates=== Installation instructions. ===PAINT paper=== * Latest draft: https://docs.google.com/document/d/1cjIPb4LP8ifmq7k3ryECw5w9YsB8PdB_/edit * Supplemental materials: https://docs.google.com/document/d/1KN4ROPx6ddxsXOaUg5puc4LzgCtuUUYb/edit#heading=h.gjdgxs * Enrichment test site. Category:PAINT"
- 14:2514:25, 13 February 2024 diff hist +46 10 Jan 2024 PAINT Conference Call →Present current
- 14:2514:25, 13 February 2024 diff hist +40 PAINT Conference Calls →PAINT Conference Call Agenda and Minutes 2024
8 January 2024
- 19:0719:07, 8 January 2024 diff hist +154 10 Jan 2024 PAINT Conference Call →Update on automatic replacement of obsoleted GO terms in PAINT annotations
- 19:0219:02, 8 January 2024 diff hist +129 10 Jan 2024 PAINT Conference Call No edit summary
- 19:0019:00, 8 January 2024 diff hist +364 N 10 Jan 2024 PAINT Conference Call Created page with "==Present== ==Agenda== ===PAINT paper=== We are going to focus our discussion on the new draft of human functionome paper. Here is the link to the draft. https://docs.google.com/document/d/1UHaO-ti3WN7r4zcbZnyRyMYUEhJh-d5NqljTktzLQyg/edit?usp=sharing There are some new data. Huaiyu circulated some of them. We can discuss about them. Category:PAINT"
- 17:3717:37, 8 January 2024 diff hist +92 PAINT Conference Calls No edit summary
14 December 2023
- 14:5914:59, 14 December 2023 diff hist 0 13 December 2023 PAINT Conference Call →Other topics, year end wrap up current
13 December 2023
- 13:5513:55, 13 December 2023 diff hist +49 13 December 2023 PAINT Conference Call →Other topics, year end wrap up
- 13:4413:44, 13 December 2023 diff hist +48 13 December 2023 PAINT Conference Call →Present
- 12:2512:25, 13 December 2023 diff hist −1 13 December 2023 PAINT Conference Call →Other topics, year end wrap up
- 12:2412:24, 13 December 2023 diff hist +3 13 December 2023 PAINT Conference Call →Other topics, year end wrap up
- 12:2412:24, 13 December 2023 diff hist +283 13 December 2023 PAINT Conference Call No edit summary
11 December 2023
- 18:4118:41, 11 December 2023 diff hist +84 N 13 December 2023 PAINT Conference Call Created page with "==Present== ==Agenda== Please suggest topics to discuss. Category:PAINT"
- 18:3818:38, 11 December 2023 diff hist +45 PAINT Conference Calls →PAINT Conference Call Agenda and Minutes 2023
17 October 2023
- 17:0417:04, 17 October 2023 diff hist +133 PAINT User Guide →PAINT software
- 16:5816:58, 17 October 2023 diff hist +131 PAINT User Guide →Step 2: Open a family to curate
- 16:5616:56, 17 October 2023 diff hist +59 PAINT User Guide →Step 1: Find and "lock" families for curation
- 16:5416:54, 17 October 2023 diff hist +82 PAINT User Guide →Curating a gene family
- 16:2816:28, 17 October 2023 diff hist +96 PAINT User Guide →Step 2: Open a family to curate
- 16:2716:27, 17 October 2023 diff hist +198 PAINT User Guide →Step 1: Find and "lock" families for curation
- 16:2316:23, 17 October 2023 diff hist +81 PAINT User Guide →Login
- 16:2116:21, 17 October 2023 diff hist +213 PAINT User Guide →Installing and configuring PAINT
20 September 2023
- 15:1915:19, 20 September 2023 diff hist +229 20 September 2023 PAINT Conference Call →Shortening the cycle between new experimental annotations and PAINT current
- 14:4514:45, 20 September 2023 diff hist +361 20 September 2023 PAINT Conference Call →S. japonicus taxon issue
- 14:4214:42, 20 September 2023 diff hist +222 20 September 2023 PAINT Conference Call →PANTHER18.0 release
- 14:4014:40, 20 September 2023 diff hist +15 20 September 2023 PAINT Conference Call →PANTHER17 tree review
- 14:3914:39, 20 September 2023 diff hist +15 20 September 2023 PAINT Conference Call →Shortening the cycle between new experimental annotations and PAINT
- 14:3614:36, 20 September 2023 diff hist +179 20 September 2023 PAINT Conference Call →PANTHER17 tree review
- 12:3012:30, 20 September 2023 diff hist +44 20 September 2023 PAINT Conference Call →Present
15 September 2023
- 12:4112:41, 15 September 2023 diff hist +629 20 September 2023 PAINT Conference Call No edit summary
12 September 2023
- 12:5112:51, 12 September 2023 diff hist +876 N 20 September 2023 PAINT Conference Call Created page with "==Present== ==Agenda== ===PANTHER17 tree review=== Here is the [https://docs.google.com/spreadsheets/d/1fYPOdrtXvhoaCJN0ZA-SeZP4zogH%20CEuD79xWAjV5p4/edit spreadsheet] with missing human IBAs between v.15 and v.17. Missing annotations can be due to multiple reasons. A common one is the replaced GO terms are not used for the obsoleted term. ===Shortening the cycle between new experimental annotations and PAINT=== Currently, once new experimental annotations are rele..."
- 12:4412:44, 12 September 2023 diff hist 0 PAINT Conference Calls No edit summary
31 July 2023
- 12:3212:32, 31 July 2023 diff hist +438 N 13 September 2023 PAINT Conference Call Created page with "==Present== ==Agenda== ===Shortening the cycle between new experimental annotations and PAINT=== Currently, once new experimental annotations are released by GO, it takes up to one month to be visible in PAINT tool. The question is whether the cycle can be shortened. Below are a few ideas. *Snapshot is loaded weekly. *Noctua annotations could be loaded directly. *Literature curation is done directly in PAINT. Category:PAINT" current
- 12:2412:24, 31 July 2023 diff hist +46 m PAINT Conference Calls →PAINT Conference Call Agenda and Minutes 2023
12 June 2023
- 17:5417:54, 12 June 2023 diff hist +801 N 14 June 2023 PAINT Conference Call Created page with "==Present== Marc, Dustin, Anushya, Paul T, Huaiyu, Pascale ==Agenda== ===PANTHER 18 build=== The node forward tracking from v.15 to v.18 is not better than that from v.15 to 17. After more careful review of trees, the conclusion from the last call that trees map better from 15 to 18 is not true either. It seems that the differences in tree topology were caused by the sequence alignment. <Dustin, please add some stats here> Here is the proposed plan based on these dat..."
- 16:3016:30, 12 June 2023 diff hist +41 PAINT Conference Calls →PAINT Conference Call Agenda and Minutes 2023
17 May 2023
- 21:0121:01, 17 May 2023 diff hist +548 17 May 2023 PAINT Conference Call →PANTHER 18 build
- 20:4620:46, 17 May 2023 diff hist +551 17 May 2023 PAINT Conference Call →Dropping mouse and rat IMP annotations from the PAINT load (by Pascale)
- 12:2412:24, 17 May 2023 diff hist +24 17 May 2023 PAINT Conference Call →Agenda
- 12:0512:05, 17 May 2023 diff hist 0 17 May 2023 PAINT Conference Call →Propping mouse and rat IMP annotations from the PAINT load (by Pascale)
11 May 2023
- 17:2117:21, 11 May 2023 diff hist +252 N 17 May 2023 PAINT Conference Call Created page with "==Present== Marc, Dustin, Anushya, Paul T, Huaiyu, Pascale ==Agenda== ===Propping mouse and rat IMP annotations from the PAINT load (by Pascale)=== We need justification. ===PAN-GO paper=== Status update. What remains to be do? Category:PAINT"
- 17:1717:17, 11 May 2023 diff hist +40 PAINT Conference Calls →PAINT Conference Call Agenda and Minutes 2023
12 April 2023
- 19:1919:19, 12 April 2023 diff hist +1,585 12 April 2023 PAINT Conference Call No edit summary current
6 April 2023
- 14:2814:28, 6 April 2023 diff hist +66 12 April 2023 PAINT Conference Call No edit summary
5 April 2023
- 13:2613:26, 5 April 2023 diff hist +242 N 12 April 2023 PAINT Conference Call Created page with "==Present== ==Agenda== ===PANTHER17 release and family review=== ===PAINT paper=== Here is the link to the draft. https://docs.google.com/document/d/1UHaO-ti3WN7r4zcbZnyRyMYUEhJh-d5NqljTktzLQyg/edit?usp=sharing Category:PAINT"
- 13:2413:24, 5 April 2023 diff hist +46 1 March 2023 PAINT Conference Call No edit summary current
- 13:2213:22, 5 April 2023 diff hist +45 PAINT Conference Calls No edit summary
1 March 2023
- 19:1719:17, 1 March 2023 diff hist +136 1 March 2023 PAINT Conference Call →PAINT paper
- 19:1519:15, 1 March 2023 diff hist +882 1 March 2023 PAINT Conference Call No edit summary
28 February 2023
- 15:4215:42, 28 February 2023 diff hist +1,196 N 1 March 2023 PAINT Conference Call Created page with "==Present== ==Agenda== ===PANTHER17 release update=== *PANTHER17 was released. See minutes in the November PAINT call. *A bug was identified in December that missed some forward track of IBDs. As a result, the number of lost IBAs will decrease once the bug is fixed. **Only affects IBDs that were not forward-tracked via PTN and instead tracked to a descendant node. More specifically, these IBDs that wer..."
- 15:3815:38, 28 February 2023 diff hist +41 PAINT Conference Calls →PAINT Conference Call Agenda and Minutes 2023
1 February 2023
- 13:1313:13, 1 February 2023 diff hist +44 1 Feb 2023 PAINT Conference Call →Present current
- 12:3112:31, 1 February 2023 diff hist +330 1 Feb 2023 PAINT Conference Call No edit summary
30 January 2023
- 17:2317:23, 30 January 2023 diff hist +262 N 1 Feb 2023 PAINT Conference Call Created page with "==Present== ==Agenda== We are going to focus our discussion on the new draft of human functionome paper. Here is the link to the draft. https://docs.google.com/document/d/1UHaO-ti3WN7r4zcbZnyRyMYUEhJh-d5NqljTktzLQyg/edit?usp=sharing Category:PAINT"
- 17:1617:16, 30 January 2023 diff hist +91 PAINT Conference Calls No edit summary
7 December 2022
- 13:0513:05, 7 December 2022 diff hist +45 7th Dec 2022 PAINT Conference call →Present current
- 13:0513:05, 7 December 2022 diff hist +5 7th Dec 2022 PAINT Conference call →Agenda
5 December 2022
- 18:3118:31, 5 December 2022 diff hist +271 N 7th Dec 2022 PAINT Conference call Created page with "==Present== ==Agenda== ===PAINT human paper discussion=== Topics to discuss *Rearrange the sections? *Move some sections to supplemental materials https://docs.google.com/document/d/1-8wVCPg7GEZQ9l3ox85hBO48YBoknRXOG_B9AJ6YZ0Q/edit?usp=sharing Category:PAINT"
- 18:2018:20, 5 December 2022 diff hist +41 PAINT Conference Calls →PAINT Conference Call Minutes 2022
3 November 2022
- 16:5116:51, 3 November 2022 diff hist −21 PAINT User Guide →Partial annotation of trees
- 16:4916:49, 3 November 2022 diff hist +20 PAINT User Guide →Partial annotation of trees
- 16:4516:45, 3 November 2022 diff hist 0 PAINT User Guide →Making an inference: Transferring annotations
- 16:3116:31, 3 November 2022 diff hist −2 PAINT User Guide →PAINT navigation functionality
- 16:2916:29, 3 November 2022 diff hist +37 PAINT User Guide →Annotations and Evidence windows
- 16:2816:28, 3 November 2022 diff hist +38 PAINT User Guide →Evidence window
- 16:2716:27, 3 November 2022 diff hist 0 PAINT User Guide →Annotations and Evidence windows
- 16:2216:22, 3 November 2022 diff hist +1,177 PAINT User Guide →Multiple sequence alignment (MSA)
- 15:4715:47, 3 November 2022 diff hist +94 N File:PAINT MSA key residue.png Screenshot of PAINT MSA key residue view. This is used for the PAINT user guide. current
- 15:4615:46, 3 November 2022 diff hist +50 N File:PAINT MSA domain.png Screenshot of PAINT MSA domain view. current
2 November 2022
1 November 2022
- 15:1315:13, 1 November 2022 diff hist +788 2nd Nov 2022 PAINT Conference call →Agenda
- 14:3314:33, 1 November 2022 diff hist +325 N 2nd Nov 2022 PAINT Conference call Created page with "==Present== ==Agenda== ===PANTHER17.0 release update=== ===New PAINT software release on Oct.31st, 2022=== ===Continue discussing PAINT human paper=== Here is the link to the manuscript: https://docs.google.com/document/d/1-8wVCPg7GEZQ9l3ox85hBO48YBoknRXOG_B9AJ6YZ0Q/edit?usp=sharing Category:PAINT"
- 14:3014:30, 1 November 2022 diff hist +41 PAINT Conference Calls No edit summary
5 October 2022
- 22:1822:18, 5 October 2022 diff hist +6 5th Oct 2022 PAINT Conference call →Present current
- 12:2712:27, 5 October 2022 diff hist +40 5th Oct 2022 PAINT Conference call →Present
- 12:2212:22, 5 October 2022 diff hist +93 5th Oct 2022 PAINT Conference call →New features for PAINT software
23 September 2022
- 13:0213:02, 23 September 2022 diff hist +315 N 5th Oct 2022 PAINT Conference call Created page with "==Present== ==Agenda== ===Conversion PAINT to PANTHER17.0=== ===New features for PAINT software=== ===Continue discussing PAINT human paper=== Here is the link to the manuscript: https://docs.google.com/document/d/1-8wVCPg7GEZQ9l3ox85hBO48YBoknRXOG_B9AJ6YZ0Q/edit?usp=sharing Category:PAINT"
- 12:5912:59, 23 September 2022 diff hist +41 PAINT Conference Calls →PAINT Conference Call Minutes 2022
2 September 2022
- 18:2018:20, 2 September 2022 diff hist +36 3rd Aug 2022 PAINT Conference call No edit summary current
- 18:1818:18, 2 September 2022 diff hist +237 N 7th Sept 2022 PAINT Conference call Created page with "==Present== ==Agenda== ===Continue discussing PAINT human paper=== Here is the link to the manuscript: https://docs.google.com/document/d/1-8wVCPg7GEZQ9l3ox85hBO48YBoknRXOG_B9AJ6YZ0Q/edit?usp=sharing Category:PAINT" current
- 18:1818:18, 2 September 2022 diff hist +42 PAINT Conference Calls →PAINT Conference Call Minutes 2022
2 August 2022
- 13:4713:47, 2 August 2022 diff hist +238 N 3rd Aug 2022 PAINT Conference call Created page with " ==Present== ==Agenda== ===Continue discussing PAINT human paper=== Here is the link to the manuscript: https://docs.google.com/document/d/1-8wVCPg7GEZQ9l3ox85hBO48YBoknRXOG_B9AJ6YZ0Q/edit?usp=sharing Category:PAINT"
- 13:4513:45, 2 August 2022 diff hist +41 PAINT Conference Calls →PAINT Conference Call Minutes 2022
- 13:4413:44, 2 August 2022 diff hist +37 6th July 2022 PAINT Conference Call No edit summary current
5 July 2022
- 12:5112:51, 5 July 2022 diff hist +221 N 6th July 2022 PAINT Conference Call Created page with " ==Present== ==Agenda== ===Discuss PAINT human paper=== Here is the link to the manuscript: https://docs.google.com/document/d/1-8wVCPg7GEZQ9l3ox85hBO48YBoknRXOG_B9AJ6YZ0Q/edit?usp=sharing Category:PAINT"
- 12:4812:48, 5 July 2022 diff hist +42 PAINT Conference Calls →PAINT Conference Call Minutes 2022
18 April 2022
- 14:5514:55, 18 April 2022 diff hist +265 N 20 Apr 2022 PAINT Conference Call Created page with " ==Present== '''This meeting was rescheduled from April 6, 2022''' ==Agenda== ===Milestone achieved: completion of PAINT curation of all families with human genes=== ===Prepare for GO meeting=== ===Update PAINT to PANTHER17.0=== Category:PAINT"
- 14:4414:44, 18 April 2022 diff hist +1 PAINT Conference Calls →PAINT Conference Call Minutes 2022 Tag: Manual revert