User contributions for Paul Thomas
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9 March 2014
- 21:3021:30, 9 March 2014 diff hist +59 2014 College Station GOC Meeting Agenda →3:30 - 3:45 pm Break
- 21:2921:29, 9 March 2014 diff hist +75 2014 College Station GOC Meeting Agenda →12:30 - 2:00 pm Lunch
- 21:1521:15, 9 March 2014 diff hist +28 2014 College Station GOC Meeting Agenda →Annotation issues
- 21:0821:08, 9 March 2014 diff hist +19 2014 College Station GOC Meeting Agenda →Annotation issues
- 21:0221:02, 9 March 2014 diff hist +38 2014 College Station GOC Meeting Agenda →Annotation issues
- 21:0021:00, 9 March 2014 diff hist +7 2014 College Station GOC Meeting Agenda →Annotation issues
- 20:5920:59, 9 March 2014 diff hist +100 2014 College Station GOC Meeting Agenda →Annotation issues
- 20:5320:53, 9 March 2014 diff hist +106 2014 College Station GOC Meeting Agenda →8:30 Start
- 20:4720:47, 9 March 2014 diff hist −25 2014 College Station GOC Meeting Agenda →Agenda
- 20:4020:40, 9 March 2014 diff hist +63 2014 College Station GOC Meeting Agenda →12:30 - 2:00 pm Lunch
- 20:3920:39, 9 March 2014 diff hist +8 2014 College Station GOC Meeting Agenda →Software
- 20:3720:37, 9 March 2014 diff hist +160 2014 College Station GOC Meeting Agenda →8:30 Start
5 February 2014
- 15:0815:08, 5 February 2014 diff hist +157 2014 College Station GOC Meeting Agenda →Saturday 15 March - Pre-Meeting Working Group(s)
12 December 2013
- 15:2915:29, 12 December 2013 diff hist +5,086 N Reference Genome progress report for 2013 Created page with "Aim 3. We will perform phylogenetically-based propagation of annotations. [This effort cut by 1 FTE as a result of final funding level]. During the past year, work on this aim h..."
26 November 2013
- 13:0913:09, 26 November 2013 diff hist +58 PAINT - Apoptosis (Archived) No edit summary
15 November 2013
- 13:0313:03, 15 November 2013 diff hist +12 PAINT - Apoptosis (Archived) No edit summary
16 October 2013
- 14:3314:33, 16 October 2013 diff hist +429 Manager 16October2013 No edit summary
5 June 2013
- 13:5213:52, 5 June 2013 diff hist +1,495 N 2013 Bar Harbor Logistics Created page with "=Dates= The Fall 2013 GO Consortium meeting will be held October 4-6, in Bar Harbor, ME. On the 3rd, we are considering scheduling a few small working-group sessions. =Agenda=..."
- 13:3613:36, 5 June 2013 diff hist +90 Consortium Meetings and Workshops No edit summary
11 April 2013
- 03:4003:40, 11 April 2013 diff hist −3 2013 Cambridge GOC Meeting Agenda No edit summary
10 April 2013
- 11:5811:58, 10 April 2013 diff hist +405 2013 Cambridge GOC Meeting Agenda No edit summary
29 March 2013
- 14:1214:12, 29 March 2013 diff hist +39 2013 Cambridge GOC Meeting Agenda →Biological Knowledge
- 14:0914:09, 29 March 2013 diff hist +125 2013 Cambridge GOC Meeting Agenda →Biological Knowledge
20 February 2013
- 12:3812:38, 20 February 2013 diff hist +50 2013 Cambridge GOC Meeting Agenda →Biological Knowledge
6 February 2013
16 December 2012
- 16:4016:40, 16 December 2012 diff hist +3,229 N Reference Genome progress report for 2012 Created page with "Aim 3. We will perform phylogenetically-based propagation of annotations. There are two main parts to this aim: (1) creating the infrastructure required to support phylogenetic ..."
13 December 2012
- 15:1615:16, 13 December 2012 diff hist −51 PAINT User Guide →Submitting PAINT annotations to the GO database using SVN
- 14:4414:44, 13 December 2012 diff hist +56 PAINT User Guide →Submitting PAINT annotations to the GO database using SVN
- 14:4214:42, 13 December 2012 diff hist +337 PAINT User Guide →Submitting PAINT annotations to the GO database using SVN
- 14:2514:25, 13 December 2012 diff hist +635 PAINT User Guide →Submitting PAINT annotations to the GO database using SVN
- 14:0514:05, 13 December 2012 diff hist +142 PAINT User Guide →Submitting PAINT annotations to the GO database using SVN
10 December 2012
- 20:0920:09, 10 December 2012 diff hist +4 PAINT User Guide →Summary
- 20:0920:09, 10 December 2012 diff hist +61 PAINT User Guide →Summary
- 17:0017:00, 10 December 2012 diff hist +166 PAINT User Guide →Annotation matrix
- 16:5616:56, 10 December 2012 diff hist +1 PAINT User Guide →Annotation matrix
- 16:5616:56, 10 December 2012 diff hist +505 PAINT User Guide →Annotation matrix
7 December 2012
- 17:3717:37, 7 December 2012 diff hist −274 PAINT User Guide →Other useful links
- 17:3117:31, 7 December 2012 diff hist −21 PAINT User Guide →Multiple sequence alignment (MSA)
- 17:3017:30, 7 December 2012 diff hist −1,141 PAINT User Guide →Recommended configuration for curation
- 17:2717:27, 7 December 2012 diff hist −162 PAINT User Guide →Known bugs
- 17:2217:22, 7 December 2012 diff hist +12 2012 PAINT No edit summary
- 17:2117:21, 7 December 2012 diff hist 0 2012 PAINT No edit summary
- 17:1817:18, 7 December 2012 diff hist +30 2012 PAINT No edit summary
- 17:1817:18, 7 December 2012 diff hist +31 2012 PAINT No edit summary
- 16:5616:56, 7 December 2012 diff hist −406 2012 PAINT No edit summary
- 16:4916:49, 7 December 2012 diff hist +1 2012 PAINT No edit summary
4 December 2012
- 17:1617:16, 4 December 2012 diff hist +92 2012 PAINT No edit summary
12 November 2012
- 14:3314:33, 12 November 2012 diff hist +31 2012 PAINT workshop Logistics →Attendees
- 14:3114:31, 12 November 2012 diff hist +58 2012 PAINT workshop Logistics →Dates
9 October 2012
- 12:4312:43, 9 October 2012 diff hist +119 2012 GOC Meeting Caltech →Annotation
- 12:2612:26, 9 October 2012 diff hist 0 N File:OverviewOntologyAnnotation.pdf No edit summary current
- 12:2612:26, 9 October 2012 diff hist 0 2012 GOC Meeting Caltech →Annotation via Ontology: Production and Priorities
- 12:2412:24, 9 October 2012 diff hist +4 2012 GOC Meeting Caltech →Annotation via Ontology: Production and Priorities
26 September 2012
- 17:0617:06, 26 September 2012 diff hist +81 2012 Caltech GOC Meeting Logistics Table edited by Paul Thomas via TableEdit
- 12:4412:44, 26 September 2012 diff hist −230 2012 GOC Meeting Caltech No edit summary
- 12:3712:37, 26 September 2012 diff hist −30 2012 GOC Meeting Caltech No edit summary
19 September 2012
- 13:3513:35, 19 September 2012 diff hist +39 2012 Caltech GOC Meeting Logistics Table edited by Paul Thomas via TableEdit
- 13:1413:14, 19 September 2012 diff hist +126 2012 GOC Meeting Caltech No edit summary
- 10:4210:42, 19 September 2012 diff hist −75 2012 GOC Meeting Caltech →Biological Representation - Paul T
7 March 2012
- 13:2213:22, 7 March 2012 diff hist 0 N File:Basic PAINT annotation background.pdf No edit summary current
- 13:2213:22, 7 March 2012 diff hist 0 N File:Current and proposed annotation flow.pdf No edit summary current
- 13:2113:21, 7 March 2012 diff hist 0 N File:Enhanced expressivity.pdf No edit summary current
- 13:2013:20, 7 March 2012 diff hist 0 N File:Survey summary 3E thru 4.pdf No edit summary current
- 13:2013:20, 7 March 2012 diff hist +126 2012 Annotation Meeting Stanford →Concurrent sessions (4 hr)
- 13:1813:18, 7 March 2012 diff hist −168 2012 Annotation Meeting Stanford →Vision for GO annotation process
- 13:1513:15, 7 March 2012 diff hist +51 2012 Annotation Meeting Stanford →Proposal for GOC use of common annotation framework to support literature annotation and subsequent phylogenetic annotation process
- 13:1313:13, 7 March 2012 diff hist +64 2012 Annotation Meeting Stanford →Current GO annotation status
- 13:1013:10, 7 March 2012 diff hist −14 Consortium Meetings and Workshops →2012
15 February 2012
- 14:2814:28, 15 February 2012 diff hist −7 2012 Annotation Meeting Stanford →Case studies of state-of-the-art annotation approaches
- 14:0414:04, 15 February 2012 diff hist −1,140 2012 Annotation Meeting Stanford No edit summary
30 January 2012
- 19:2119:21, 30 January 2012 diff hist +40 2012 Stanford Annotation Meeting Logistics →Attendees
- 19:2019:20, 30 January 2012 diff hist +42 2012 Stanford Annotation Meeting Logistics No edit summary
19 January 2012
- 12:4612:46, 19 January 2012 diff hist +36 Hinxton OBO-Edit/Protege 4 workshop Jan 2012 No edit summary
11 January 2012
- 13:5913:59, 11 January 2012 diff hist +72 2012 Annotation Meeting Stanford →Preparation needed in advance of GO Consortium meeting
21 December 2011
- 14:2014:20, 21 December 2011 diff hist −31 2012 Annotation Meeting Stanford →Goals
- 13:5713:57, 21 December 2011 diff hist +607 2012 Annotation Meeting Stanford →Preparation needed in advance of GO Consortium meeting (incomplete, see agenda)
14 December 2011
- 15:0515:05, 14 December 2011 diff hist −843 2012 Annotation Meeting Stanford →Agenda
- 15:0515:05, 14 December 2011 diff hist −361 2012 Annotation Meeting Stanford →Goals
- 14:5114:51, 14 December 2011 diff hist −745 2012 Annotation Meeting Stanford →Preparation needed in advance of GO Consortium meeting
- 14:4614:46, 14 December 2011 diff hist +87 2012 Annotation Meeting Stanford →Discussion: what should the annotation process be?
- 14:4314:43, 14 December 2011 diff hist −2,054 2012 Annotation Meeting Stanford →Specific developments to improve the current GO annotation format
- 14:3614:36, 14 December 2011 diff hist −283 2012 Annotation Meeting Stanford →"How do we become an Efficient Annotation Factory?"
- 14:2614:26, 14 December 2011 diff hist −503 2012 Annotation Meeting Stanford →"How do we become an Efficient Annotation Factory?"
5 November 2011
11 October 2011
- 09:2709:27, 11 October 2011 diff hist +6 PAINT annotation guidelines →Annotating ancestral genes.
- 09:2509:25, 11 October 2011 diff hist +23 PAINT annotation guidelines No edit summary
- 09:2209:22, 11 October 2011 diff hist +75 PAINT annotation guidelines →Annotating ancestral genes.
7 September 2011
- 11:0711:07, 7 September 2011 diff hist +122 Manager 7Sep11 →Agenda
4 August 2011
- 10:2010:20, 4 August 2011 diff hist 0 N File:Paul's LEGO white paper March 2010.pdf No edit summary current
- 10:1910:19, 4 August 2011 diff hist 0 N File:Paul's LEGO presentation from Bar Harbor Sept 2010.pdf No edit summary current
- 10:1810:18, 4 August 2011 diff hist +4 LEGO-style annotation ideas →Useful links
- 10:1810:18, 4 August 2011 diff hist +71 LEGO-style annotation ideas →Useful links
20 May 2011
- 18:2018:20, 20 May 2011 diff hist +32 2011 USC Meeting Agenda →11-noon Wrap up, action items
- 16:4516:45, 20 May 2011 diff hist −2 2011 USC Meeting Agenda →Saturday May 21, University Club, Banquet Room
- 13:1913:19, 20 May 2011 diff hist +3 2011 USC Meeting Agenda No edit summary
- 11:2911:29, 20 May 2011 diff hist +1 2011 USC Meeting Agenda →8:15-12:30 Working Group Reports (cont), plans through 2011, discussion of priorities
- 11:0911:09, 20 May 2011 diff hist +24 2011 USC Meeting Agenda →9:00-10:45 Discussion of the Vision defined in the GOC NIH grant application
- 10:4310:43, 20 May 2011 diff hist +103 2011 USC Meeting Agenda No edit summary
19 May 2011
- 14:1714:17, 19 May 2011 diff hist 0 2011 USC Meeting Agenda →11:15 Evidence Code Ontology presentation
- 14:1714:17, 19 May 2011 diff hist 0 2011 USC Meeting Agenda →11:30 Evidence Code Ontology presentation
- 14:1614:16, 19 May 2011 diff hist +1 2011 USC Meeting Agenda No edit summary
- 13:3013:30, 19 May 2011 diff hist +8 2011 USC Meeting Logistics →Attendees
18 May 2011
- 18:0718:07, 18 May 2011 diff hist +7 2011 USC Meeting Agenda →Group dinner at Rosa Mexicano at LA Live (Downtown LA)
- 17:4917:49, 18 May 2011 diff hist +7 2011 USC Meeting Logistics →Venue
- 17:4917:49, 18 May 2011 diff hist +96 2011 USC Meeting Agenda No edit summary
- 16:5816:58, 18 May 2011 diff hist −123 2011 USC Meeting Agenda →2:45 Phylogenetically-based annotations (Paul T)
- 15:5415:54, 18 May 2011 diff hist +43 2011 USC Meeting Agenda →9:00 Reference Genomes
17 May 2011
- 18:5718:57, 17 May 2011 diff hist +105 2011 USC Meeting Logistics →Lodging Information
- 13:3713:37, 17 May 2011 diff hist −78 2011 USC Meeting Agenda No edit summary
- 13:3713:37, 17 May 2011 diff hist +25 2011 USC Meeting Agenda →11:45 Review Action items
- 13:3613:36, 17 May 2011 diff hist 0 2011 USC Meeting Agenda →Satellite meetings
- 13:3413:34, 17 May 2011 diff hist +10 2011 USC Meeting Agenda →May 19
- 13:3313:33, 17 May 2011 diff hist +255 2011 USC Meeting Agenda No edit summary
- 13:1813:18, 17 May 2011 diff hist +4 2011 USC Meeting Agenda No edit summary
- 13:1513:15, 17 May 2011 diff hist +124 2011 USC Meeting Agenda No edit summary
11 May 2011
- 13:5113:51, 11 May 2011 diff hist +30 2011 USC Meeting Logistics No edit summary
- 13:5013:50, 11 May 2011 diff hist +179 2011 USC Meeting Logistics No edit summary
- 13:4613:46, 11 May 2011 diff hist +309 2011 USC Meeting Logistics No edit summary
- 13:4013:40, 11 May 2011 diff hist +188 2011 USC Meeting Logistics No edit summary
- 13:3313:33, 11 May 2011 diff hist 0 2011 USC Meeting Logistics No edit summary
- 13:2213:22, 11 May 2011 diff hist +47 2011 USC Meeting Logistics →Registration
4 May 2011
- 21:2521:25, 4 May 2011 diff hist −212 2011 USC Meeting Logistics →Lodging Information
- 12:2212:22, 4 May 2011 diff hist −74 2011 USC Meeting Agenda →Discussion of the Vision defined in the GOC NIH grant application
- 12:1312:13, 4 May 2011 diff hist −16 2011 USC Meeting Agenda No edit summary
- 12:0412:04, 4 May 2011 diff hist +402 2011 USC Meeting Agenda →Discussion of the Vision defined in the GOC NIH grant application
- 12:0012:00, 4 May 2011 diff hist +377 2011 USC Meeting Agenda No edit summary
19 April 2011
- 20:1220:12, 19 April 2011 diff hist +75 2011 USC Meeting Logistics →Lodging Information
- 20:1020:10, 19 April 2011 diff hist +17 2011 USC Meeting Logistics →Lodging Information
- 20:0920:09, 19 April 2011 diff hist +62 2011 USC Meeting Logistics →Lodging Information
30 March 2011
- 13:3013:30, 30 March 2011 diff hist +28 2011 USC Meeting Logistics No edit summary
29 March 2011
- 22:4522:45, 29 March 2011 diff hist +21 2011 USC Meeting Logistics →Venue
- 22:4322:43, 29 March 2011 diff hist +150 2011 USC Meeting Logistics →Lodging Information
- 22:4022:40, 29 March 2011 diff hist +297 2011 USC Meeting Logistics →Venue
- 22:2822:28, 29 March 2011 diff hist +451 2011 USC Meeting Logistics →Maps and Transportation
- 21:3421:34, 29 March 2011 diff hist +13 2011 USC Meeting Logistics →To do
- 21:3321:33, 29 March 2011 diff hist +11 2011 USC Meeting Logistics →Maps and Transportation
- 21:3321:33, 29 March 2011 diff hist −42 2011 USC Meeting Logistics →Registration
- 21:2821:28, 29 March 2011 diff hist +2,058 N 2011 USC Meeting Logistics Created page with '=Dates= The GO meeting will be begin at 9am on May 19, 2011 and end at 1pm on May 21, 2011, and will be held at the University of Southern California in Los Angeles. =Venue= Dav…'
- 20:4420:44, 29 March 2011 diff hist +33 Consortium Meetings and Workshops No edit summary
15 December 2010
- 12:4212:42, 15 December 2010 diff hist +8 Manager 15Dec10 →Present
7 December 2010
- 12:3912:39, 7 December 2010 diff hist +6 PAINT User Guide →Branch lengths
- 11:4411:44, 7 December 2010 diff hist +732 PAINT User Guide No edit summary
2 December 2010
- 17:1217:12, 2 December 2010 diff hist +2,046 PAINT User Guide No edit summary
- 13:5513:55, 2 December 2010 diff hist +66 PAINT annotation guidelines No edit summary
- 13:5213:52, 2 December 2010 diff hist +4,694 N PAINT User Guide Created page with '=Summary= PAINT is a Java application for viewing and annotating phylogenetic trees. This document briefly describes how to set up and use the tool. =Requirements= Java 1.6…'
- 13:0313:03, 2 December 2010 diff hist +1 Phylogenetic annotation overview No edit summary
- 13:0313:03, 2 December 2010 diff hist +85 Phylogenetic annotation overview No edit summary
- 13:0013:00, 2 December 2010 diff hist −4 Paint Redirected page to PAINT current
23 November 2010
- 14:1314:13, 23 November 2010 diff hist +130 PAINT annotation guidelines No edit summary
- 11:4411:44, 23 November 2010 diff hist −3 PAINT annotation guidelines →Semantics of annotations
- 11:4211:42, 23 November 2010 diff hist +49 PAINT annotation guidelines No edit summary
18 November 2010
- 10:2010:20, 18 November 2010 diff hist +343 PAINT annotation guidelines No edit summary
9 November 2010
- 17:3117:31, 9 November 2010 diff hist +1,568 PAINT annotation guidelines No edit summary
6 September 2010
25 August 2010
4 June 2010
26 April 2010
- 15:0015:00, 26 April 2010 diff hist +3,755 Phylogenetic annotation overview No edit summary
2 April 2010
- 20:0620:06, 2 April 2010 diff hist −1 Reference proteomes files →Currently available pre-alpha files: not ready for release
- 20:0120:01, 2 April 2010 diff hist 0 N File:SpeciesList.pdf No edit summary current
- 19:5919:59, 2 April 2010 diff hist +130 Reference proteomes files →Currently available pre-alpha files: not ready for release
30 March 2010
- 18:1418:14, 30 March 2010 diff hist +362 2010 Stanford Meeting Logistics →Evidence Codes
- 12:2912:29, 30 March 2010 diff hist −22 2010 Stanford Meeting Logistics →Ref Genome Project and PAINT [Pascale and Kara]
- 02:4002:40, 30 March 2010 diff hist −58 2010 Stanford Meeting Logistics →Ref Genome Project and PAINT [Pascale and Kara]
25 March 2010
2 February 2010
22 January 2010
- 15:3115:31, 22 January 2010 diff hist +20 Reference proteomes files →Background
- 15:2615:26, 22 January 2010 diff hist +13 Reference proteomes files →Background
- 15:2215:22, 22 January 2010 diff hist +181 Reference proteomes files →Currently available pre-alpha files: not ready for release
- 15:1515:15, 22 January 2010 diff hist +1,405 N Reference proteomes files Created page with '==Background== * Following the Quest for Orthologs meeting in Hinxton in July 2009, a representative group from the orthology algorithm community as well as consumers of ortholog…'
- 14:5114:51, 22 January 2010 diff hist +263 Phylogenetic Annotation Project No edit summary
2 March 2009
- 18:1518:15, 2 March 2009 diff hist +114 2009 Oregon Meeting Logistics →Attendees
18 October 2008
- 12:3212:32, 18 October 2008 diff hist +3 20th GO Consortium Meeting →10:45 Annotation Consistency and Quality Issues
- 12:1512:15, 18 October 2008 diff hist +47 20th GO Consortium Meeting →8:45 progress on homology sets and homology inference
- 12:0612:06, 18 October 2008 diff hist −5 20th GO Consortium Meeting →Discussion about protein set generation
- 12:0112:01, 18 October 2008 diff hist +34 20th GO Consortium Meeting →8:45 progress on homology sets and homology inference
15 October 2008
7 April 2008
- 14:5914:59, 7 April 2008 diff hist +9 Register →Registration for April 2008 GO Meetings at University of Utah, SLC
- 14:5714:57, 7 April 2008 diff hist +10 Register →Registration for April 2008 GO Meetings at University of Utah, SLC
- 14:5414:54, 7 April 2008 diff hist +120 Register →Registration for April 2008 GO Meetings at University of Utah, SLC