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Combined display of all available logs of GO Wiki. You can narrow down the view by selecting a log type, the username (case-sensitive), or the affected page (also case-sensitive).
- 11:57, 4 April 2024 Mi talk contribs created page 10 April 2024 PAINT Conference Call (Created page with "==Present== ==Agenda== ==="Do not annotate" terms=== Anushya gathered all the IBDs and the families that will be impacted if these annotations are removed. ===New PAINT release=== This version contains a GUI update so that curators can detect horizontal transfer nodes easily. The fill color of horizontal transfer nodes is now white. Clades where horizontal transfer occurs can also be detected easily using Tree->Color tree->color based on horizontal transfer. ===GO...")
- 21:02, 6 March 2024 Mi talk contribs created page 13 March 2024 PAINT Conference Call (Created page with "==Present== ==Agenda== ===Taxon Constraint Curation === We are correcting the taxon constraint violations in the current PAINT data using this [https://docs.google.com/spreadsheets/d/1fm2AVtvnhJoa7BUaDpg9Fc-w9cHmyzZrFZsylAUuUhw/edit?usp=sharing Google sheet file]. The PAINT tool implemented a taxon constraint check a few years ago, so it is highly unlikely that TCVs are introduced during the curation. There two likely sources for the TCVs. First, these are really old...")
- 14:29, 13 February 2024 Mi talk contribs created page 14 Feb 2024 PAINT Conference Call (Created page with "==Present== ==Agenda== ===New certificates=== Installation instructions. ===PAINT paper=== * Latest draft: https://docs.google.com/document/d/1cjIPb4LP8ifmq7k3ryECw5w9YsB8PdB_/edit * Supplemental materials: https://docs.google.com/document/d/1KN4ROPx6ddxsXOaUg5puc4LzgCtuUUYb/edit#heading=h.gjdgxs * Enrichment test site. Category:PAINT")
- 19:00, 8 January 2024 Mi talk contribs created page 10 Jan 2024 PAINT Conference Call (Created page with "==Present== ==Agenda== ===PAINT paper=== We are going to focus our discussion on the new draft of human functionome paper. Here is the link to the draft. https://docs.google.com/document/d/1UHaO-ti3WN7r4zcbZnyRyMYUEhJh-d5NqljTktzLQyg/edit?usp=sharing There are some new data. Huaiyu circulated some of them. We can discuss about them. Category:PAINT")
- 18:41, 11 December 2023 Mi talk contribs created page 13 December 2023 PAINT Conference Call (Created page with "==Present== ==Agenda== Please suggest topics to discuss. Category:PAINT")
- 12:51, 12 September 2023 Mi talk contribs created page 20 September 2023 PAINT Conference Call (Created page with "==Present== ==Agenda== ===PANTHER17 tree review=== Here is the [https://docs.google.com/spreadsheets/d/1fYPOdrtXvhoaCJN0ZA-SeZP4zogH%20CEuD79xWAjV5p4/edit spreadsheet] with missing human IBAs between v.15 and v.17. Missing annotations can be due to multiple reasons. A common one is the replaced GO terms are not used for the obsoleted term. ===Shortening the cycle between new experimental annotations and PAINT=== Currently, once new experimental annotations are rele...")
- 12:32, 31 July 2023 Mi talk contribs created page 13 September 2023 PAINT Conference Call (Created page with "==Present== ==Agenda== ===Shortening the cycle between new experimental annotations and PAINT=== Currently, once new experimental annotations are released by GO, it takes up to one month to be visible in PAINT tool. The question is whether the cycle can be shortened. Below are a few ideas. *Snapshot is loaded weekly. *Noctua annotations could be loaded directly. *Literature curation is done directly in PAINT. Category:PAINT")
- 17:54, 12 June 2023 Mi talk contribs created page 14 June 2023 PAINT Conference Call (Created page with "==Present== Marc, Dustin, Anushya, Paul T, Huaiyu, Pascale ==Agenda== ===PANTHER 18 build=== The node forward tracking from v.15 to v.18 is not better than that from v.15 to 17. After more careful review of trees, the conclusion from the last call that trees map better from 15 to 18 is not true either. It seems that the differences in tree topology were caused by the sequence alignment. <Dustin, please add some stats here> Here is the proposed plan based on these dat...")
- 17:21, 11 May 2023 Mi talk contribs created page 17 May 2023 PAINT Conference Call (Created page with "==Present== Marc, Dustin, Anushya, Paul T, Huaiyu, Pascale ==Agenda== ===Propping mouse and rat IMP annotations from the PAINT load (by Pascale)=== We need justification. ===PAN-GO paper=== Status update. What remains to be do? Category:PAINT")
- 13:26, 5 April 2023 Mi talk contribs created page 12 April 2023 PAINT Conference Call (Created page with "==Present== ==Agenda== ===PANTHER17 release and family review=== ===PAINT paper=== Here is the link to the draft. https://docs.google.com/document/d/1UHaO-ti3WN7r4zcbZnyRyMYUEhJh-d5NqljTktzLQyg/edit?usp=sharing Category:PAINT")
- 15:42, 28 February 2023 Mi talk contribs created page 1 March 2023 PAINT Conference Call (Created page with "==Present== ==Agenda== ===PANTHER17 release update=== *PANTHER17 was released. See minutes in the November PAINT call. *A bug was identified in December that missed some forward track of IBDs. As a result, the number of lost IBAs will decrease once the bug is fixed. **Only affects IBDs that were not forward-tracked via PTN and instead tracked to a descendant node. More specifically, these IBDs that wer...")
- 17:23, 30 January 2023 Mi talk contribs created page 1 Feb 2023 PAINT Conference Call (Created page with "==Present== ==Agenda== We are going to focus our discussion on the new draft of human functionome paper. Here is the link to the draft. https://docs.google.com/document/d/1UHaO-ti3WN7r4zcbZnyRyMYUEhJh-d5NqljTktzLQyg/edit?usp=sharing Category:PAINT")
- 18:31, 5 December 2022 Mi talk contribs created page 7th Dec 2022 PAINT Conference call (Created page with "==Present== ==Agenda== ===PAINT human paper discussion=== Topics to discuss *Rearrange the sections? *Move some sections to supplemental materials https://docs.google.com/document/d/1-8wVCPg7GEZQ9l3ox85hBO48YBoknRXOG_B9AJ6YZ0Q/edit?usp=sharing Category:PAINT")
- 15:47, 3 November 2022 Mi talk contribs created page File:PAINT MSA key residue.png (Screenshot of PAINT MSA key residue view. This is used for the PAINT user guide.)
- 15:47, 3 November 2022 Mi talk contribs uploaded File:PAINT MSA key residue.png (Screenshot of PAINT MSA key residue view. This is used for the PAINT user guide.)
- 15:46, 3 November 2022 Mi talk contribs created page File:PAINT MSA domain.png (Screenshot of PAINT MSA domain view.)
- 15:46, 3 November 2022 Mi talk contribs uploaded File:PAINT MSA domain.png (Screenshot of PAINT MSA domain view.)
- 14:33, 1 November 2022 Mi talk contribs created page 2nd Nov 2022 PAINT Conference call (Created page with "==Present== ==Agenda== ===PANTHER17.0 release update=== ===New PAINT software release on Oct.31st, 2022=== ===Continue discussing PAINT human paper=== Here is the link to the manuscript: https://docs.google.com/document/d/1-8wVCPg7GEZQ9l3ox85hBO48YBoknRXOG_B9AJ6YZ0Q/edit?usp=sharing Category:PAINT")
- 13:02, 23 September 2022 Mi talk contribs created page 5th Oct 2022 PAINT Conference call (Created page with "==Present== ==Agenda== ===Conversion PAINT to PANTHER17.0=== ===New features for PAINT software=== ===Continue discussing PAINT human paper=== Here is the link to the manuscript: https://docs.google.com/document/d/1-8wVCPg7GEZQ9l3ox85hBO48YBoknRXOG_B9AJ6YZ0Q/edit?usp=sharing Category:PAINT")
- 18:18, 2 September 2022 Mi talk contribs created page 7th Sept 2022 PAINT Conference call (Created page with "==Present== ==Agenda== ===Continue discussing PAINT human paper=== Here is the link to the manuscript: https://docs.google.com/document/d/1-8wVCPg7GEZQ9l3ox85hBO48YBoknRXOG_B9AJ6YZ0Q/edit?usp=sharing Category:PAINT")
- 13:47, 2 August 2022 Mi talk contribs created page 3rd Aug 2022 PAINT Conference call (Created page with " ==Present== ==Agenda== ===Continue discussing PAINT human paper=== Here is the link to the manuscript: https://docs.google.com/document/d/1-8wVCPg7GEZQ9l3ox85hBO48YBoknRXOG_B9AJ6YZ0Q/edit?usp=sharing Category:PAINT")
- 12:51, 5 July 2022 Mi talk contribs created page 6th July 2022 PAINT Conference Call (Created page with " ==Present== ==Agenda== ===Discuss PAINT human paper=== Here is the link to the manuscript: https://docs.google.com/document/d/1-8wVCPg7GEZQ9l3ox85hBO48YBoknRXOG_B9AJ6YZ0Q/edit?usp=sharing Category:PAINT")
- 14:55, 18 April 2022 Mi talk contribs created page 20 Apr 2022 PAINT Conference Call (Created page with " ==Present== '''This meeting was rescheduled from April 6, 2022''' ==Agenda== ===Milestone achieved: completion of PAINT curation of all families with human genes=== ===Prepare for GO meeting=== ===Update PAINT to PANTHER17.0=== Category:PAINT")
- 12:40, 31 March 2022 Mi talk contribs created page 6 Apr 2022 PAINT Conference Call (Created page with "==Present== ==Agenda== ===Milestone achieved: completion of PAINT curation of all families with human genes=== ===Prepare for GO meeting=== Category:PAINT")
- 13:13, 14 May 2018 Mi talk contribs uploaded File:GO NYC 2018.jpg (Group photo at the GO meeting in May 2018 in NYC.)
- 06:58, 4 October 2017 Mi talk contribs uploaded File:GO cambridge group.jpg (Group photo of GO Consortium meeting held in Cambridge in Oct. 2017)
- 08:23, 15 April 2016 Mi talk contribs uploaded File:GO 2016 Geneva meeting.JPG (Group photo in the Geneva meeting, April 2016.)
- 11:55, 10 December 2015 Mi talk contribs uploaded File:LEGO jamboree 2015 group photo.JPG
- 14:19, 17 November 2015 Mi talk contribs uploaded File:PAINT 17 11 2015.pptx (Marc's family presentation in the PAINT call on Nove. 17, 2015.)
- 10:02, 2 September 2015 Mi talk contribs uploaded File:OWL primer for GO users DOS.pdf
- 09:59, 2 September 2015 Mi talk contribs uploaded File:Synapse DOS.pdf (Synapse project presentation by David OS at GOC 2015)
- 09:54, 2 September 2015 Mi talk contribs uploaded File:Roche DOS.pdf (Roche CV mapping by David OS at GOC 2015)
- 09:51, 2 September 2015 Mi talk contribs uploaded File:Karen AnnotatingFromChIP.pdf (Karen's presentation about ChIP seq annotation at GOC 2015)
- 09:46, 2 September 2015 Mi talk contribs uploaded File:Karen AnnotatingFromChIP.pptx (Karen's presentation about ChIP seq annotation at GOC 2015)
- 13:56, 1 September 2015 Mi talk contribs uploaded File:GO enrichment Aug 2015.pdf (GO enrichment tool presentation at GOC 2015)
- 10:10, 1 September 2015 Mi talk contribs uploaded File:Donna Slonim.pdf (Presentation at the GO 2015 Symposium By Donna Slonim)
- 11:52, 31 August 2015 Mi talk contribs uploaded File:LEGO effect relation.png (Figure 3 of the LEGO specification proposal)
- 11:46, 31 August 2015 Mi talk contribs uploaded File:LEGO biological activity.png (Figure 2 of the LEGO specification proposal)
- 11:40, 31 August 2015 Mi talk contribs uploaded File:Basic annoton unit.png (Figure 1 for the LEGO specification proposal)
- 10:52, 31 August 2015 Mi talk contribs uploaded File:LEGO specfication.pdf (LEGO specification presented at the GOC 2014 by Huaiyu Mi)
- 10:23, 31 August 2015 Mi talk contribs uploaded File:PAINT update Huaiyu.pdf (Update of PAINT annotation progress at the GOC 2015 by Huaiyu Mi)
- 10:58, 13 October 2014 Mi talk contribs uploaded File:2014 GOC Barcelona.JPG (Group photo at the 2014 Barcelona GOC meeting)
- 15:12, 31 July 2014 Mi talk contribs uploaded File:PAINT jamboree 2014.jpeg (group photo of PAINT jamboree 2014 at Stanford (SGD).)
- 19:25, 10 May 2013 Mi talk contribs uploaded a new version of File:PAINT annotation panel.png (Reverted to version as of 23:23, 10 May 2013)
- 19:25, 10 May 2013 Mi talk contribs uploaded a new version of File:PAINT annotation panel.png
- 19:23, 10 May 2013 Mi talk contribs uploaded a new version of File:PAINT annotation panel.png
- 19:19, 10 May 2013 Mi talk contribs uploaded File:PAINT annotation panel.jpg
- 00:44, 6 October 2012 Mi talk contribs uploaded File:PAINT evidence.jpg
- 19:34, 5 October 2012 Mi talk contribs uploaded File:PAINT annotating node.jpg
- 18:12, 5 October 2012 Mi talk contribs uploaded File:PAINT Find.jpg