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  • ** AmiGO 2.1 release, looking at Drupal to cloud. Rama should check with Mike on Cloud solution. * Rama/Rachael:
    3 KB (524 words) - 15:00, 22 May 2014
  • Ben, Rama, Jane, Val, Eurie, Seth, Amelia
    956 bytes (140 words) - 09:35, 18 May 2010
  • 2. Rama: We have a question about the use of 'colocalizes with' qualifier. We are c 5. Rama: Ribosomal proteins
    7 KB (1,170 words) - 10:00, 12 August 2008
  • ...><span style="font-weight:bold;font-family:'Helvetica-Bold';color:#ec0003">rama: </span><span style="font-family:'Helvetica'">hello</span></p> ...><span style="font-weight:bold;font-family:'Helvetica-Bold';color:#ec0003">rama: </span><span style="font-family:'Helvetica'">i was happy with #2. Did ever
    30 KB (3,813 words) - 19:09, 29 February 2008
  • 1702910 Tanya, David, Rama 1881546 Eurie, Rama
    3 KB (382 words) - 03:08, 2 April 2009
  • Seth Mary Amelia Chris Ben Rama
    792 bytes (107 words) - 09:50, 4 March 2008
  • Rama Balakrishnan (SGD) and Shengqiang Shu (Berkeley) * Rama Balakrishnan (SGD)
    4 KB (651 words) - 05:58, 13 December 2018
  • Rama<br>
    2 KB (258 words) - 10:18, 30 June 2014
  • <span style="font-weight: bold; color: blue">rama</span>: Karen is out at a meeting. I agree we should wait. <span style="font-weight: bold; color: blue">jrichter</span>: How's about... Rama or Harold? Can you do it? (If you volunteer now, you're off the hook the ne
    31 KB (4,894 words) - 02:20, 13 July 2006
  • <span style="font-weight: bold; color: blue">rama</span>: I second that idea. <span style="font-weight: bold; color: blue">rama</span>: Karen- Is Mike going to test this today?
    13 KB (2,042 words) - 02:24, 13 July 2006
  • <span style="font-weight: bold; color: blue">rama</span>: What was it? I have the same problem. <span style="font-weight: bold; color: blue">jrichter</span>: Rama - The first thing to do is make sure that the reasoner is turned off. That'
    34 KB (5,610 words) - 02:24, 13 July 2006
  • <span style="font-weight: bold; color: blue">rama</span>: yeap, sounds good! <span style="font-weight: bold; color: blue">rama</span>: in beta20, i see the is_a icons but I don't see the part_of icons.
    32 KB (5,194 words) - 02:26, 13 July 2006
  • <span style="font-weight: bold; color: blue">rama</span>: Sure <span style="font-weight: bold; color: blue">midori</span>: Rama wanted to "save all the 'is_a' children (and is_a grand children and is_a g
    39 KB (6,163 words) - 02:27, 13 July 2006
  • ...elt they couldn't keep up. Now, none of us edit at all. After the webinar, Rama and I now feel almost up to speed
    25 KB (4,125 words) - 02:30, 13 July 2006
  • <span style="font-weight: bold; color: blue">rama</span>: Hi All, Welcome to our first IRC Chat <span style="font-weight: bold; color: blue">rama</span>: We are waiting for Pascale and Val
    44 KB (7,096 words) - 02:32, 3 August 2006
  • *Rama Balakrishnan (SGD)
    4 KB (658 words) - 06:57, 8 April 2014
  • outreach. Karen, Eurie, and Rama were the main organisers.<br>
    7 KB (1,287 words) - 05:15, 15 April 2019
  • *[[AmiGO help Term Search Results|Term Search Results]] : Rama
    2 KB (283 words) - 05:05, 14 December 2006
  • -Rama
    3 KB (508 words) - 06:34, 9 April 2019
  • GO effort organized by Rama Balakrishnan.<br> Teaching by Rama Balakrishnan, Trudy Torto-Alalibo, Fiona McCarthy,
    5 KB (743 words) - 05:16, 15 April 2019
  • * Rama: ''Its difficult to find time.'' * Rama: Suzi has been talking to JGI, they use the InterPro2GO mapping but don't c
    6 KB (1,047 words) - 13:24, 9 April 2014
  • == Should GO be represented at JGI users meeting? Rama has volunteered. == MA: Left up to Mike and Rama. If Rama goes she should be briefed. Jane to send an email to JGI as follow up.
    6 KB (976 words) - 08:50, 30 June 2014
  • * PAG meeting (Organized by Rama Balakrishnan, See wiki for full details.) * For SGD Karen is now on Ontology Development and Rama is on Outreach.
    4 KB (686 words) - 08:54, 30 June 2014
  • <span style="font-weight: bold; color: blue">rama</span>: nope <span style="font-weight: bold; color: blue">rama</span>: How about searching by kingdoms?
    20 KB (3,235 words) - 09:58, 13 February 2007
  • :Rama has suggested two - one at JGI, and the next rice meeting in Japan
    12 KB (1,933 words) - 08:31, 30 June 2014
  • Rama Balakrishnan has sent emails to users she met at the PAG meeting inviting t
    4 KB (583 words) - 05:12, 15 April 2019
  • == Rama Balakrishnan for SGD==
    7 KB (1,106 words) - 07:55, 3 March 2009
  • - Organized full-day workshop on GO, with Harold Drabkin, Rama 1232708 - Rama Balakrishnan, Kimberly Van Auken, Val Wood
    3 KB (513 words) - 08:22, 6 May 2014
  • 1490810 - Rama Balakrishnan
    5 KB (629 words) - 07:43, 20 August 2009
  • Planning for PAG outreach (Jen, with Rama, Trudy, Michelle, Fiona 1532264 - Rama Balakrishnan, Val Wood
    5 KB (770 words) - 14:38, 14 July 2014
  • 1587325 - Emily, David, Rama
    4 KB (521 words) - 02:50, 2 April 2009
  • 1592307 - Rama 1598086 - Rama
    4 KB (506 words) - 02:51, 2 April 2009
  • 1589414 - Harold, Rama
    4 KB (522 words) - 02:51, 2 April 2009
  • 1654525 - Harold, Rama 1646580 - Rama
    5 KB (722 words) - 02:52, 2 April 2009
  • Attending: Jen, Evelyn, Rama, Michelle, Fiona, Pascale. Rama: Uses email as a daily prioritization.
    5 KB (906 words) - 13:26, 9 April 2014
  • Present- Rama, JenC, Evelyn, Fiona, Pascale, Michelle<br> Rama: What is the format of this meeting? What is the role of GO?<br>
    3 KB (616 words) - 13:25, 9 April 2014
  • the transport interest group, Maria, Rama, and David for further comments? ...ussed the specific case of ?chaperone activity?, which has been obsoleted. Rama explained that the word ?chaperone? is used to mean three separate activiti
    15 KB (2,404 words) - 06:22, 16 December 2008
  • 1585196 - Houg, Rama 1652533 - Rama, John G
    6 KB (887 words) - 02:53, 2 April 2009
  • Rama Balakrishnan, Evelyn Camon, Jennifer Clark, Harold Drabkin*, Michelle Gwinn
    3 KB (556 words) - 13:23, 9 April 2014
  • <p class="p2"><span class="s6"><a href="irc://irc.macnn.com/rama,isuser"><b>rama: </b></a></span>I tested it briefly and nothing is broken as far as I can t <p class="p6"><span class="s6"><a href="irc://irc.macnn.com/rama,isuser"><b>rama: </b></a></span><a href="http://toy.lbl.gov:9002/cgi-bin/amigo/go.cgi"><spa
    25 KB (4,873 words) - 10:48, 9 April 2014
  • 1695255 - Rama
    4 KB (633 words) - 02:53, 2 April 2009
  • Maria Costanzo, Karen Christie, and Rama Balakrishnan (SGD staff)<br>
    1 KB (185 words) - 05:13, 15 April 2019
  • ...plex? How long should the interaction last for it to be called a complex? (Rama) ## Boundary between ISS & RCA and scope of RCA evidence code (Michelle and Rama (filling in for KarenC); see [http://genetics.stanford.edu/~kchris/go/evCod
    11 KB (1,617 words) - 16:26, 8 April 2014
  • rama: cool. thanks Ben rama: I agree. It is clear to me.
    7 KB (1,239 words) - 10:50, 9 April 2014
  • gwg: hi Ben, hi Rama rama: hello
    9 KB (1,683 words) - 10:48, 9 April 2014
  • Present: Rama, Michelle, Pascale, Harold ...d look for to start making GO annotations. We discussed the flowchart that Rama had sent to the group sometime back (also posted on the wiki).
    1 KB (212 words) - 13:25, 9 April 2014
  • ACTION: Eurie will talk to Rama
    4 KB (716 words) - 08:48, 30 June 2014
  • * Rama will look after outreach group while Jen is away
    2 KB (302 words) - 09:01, 30 June 2014
  • Participants: Fiona McCarthy, Michelle Gwinn, Jennifer Deegan, Rama Balakrishnan, Pascale Gaudet, did I miss anyone?
    2 KB (374 words) - 13:24, 9 April 2014
  • * Rama mentioned international meeting on rice genomics; see http://www.isrfg2007.
    6 KB (1,022 words) - 08:42, 30 June 2014
  • **Rama: EBI SRS
    680 bytes (99 words) - 14:44, 8 April 2014
  • rama has joined the channel rama: gwg- please translate
    12 KB (2,201 words) - 14:46, 8 April 2014
  • rama has joined the channel gwg: Hi Rama!
    11 KB (2,178 words) - 10:49, 9 April 2014
  • *SRS: Rama
    350 bytes (53 words) - 14:44, 8 April 2014
  • ...r><font color="#9440B1"><font size="2">(09:56:58 AM) </font><font size="3">rama:</font></font><font size="3"> thanks</font><br><font size="2"><font color="
    41 KB (6,553 words) - 10:49, 9 April 2014
  • 1753808 - Karen, Rama 1754690 - Val, Rama
    4 KB (507 words) - 03:05, 2 April 2009
  • rama: Aren't we doing what Princeton does? Provide all GA files in a pull down? rama: I think Matts request should be an enhancement- shd add to SF
    10 KB (1,833 words) - 10:50, 9 April 2014
  • Rama<br>
    25 KB (3,637 words) - 14:48, 23 April 2014
  • 1768428 Rama, Val 1771167 Rama
    3 KB (444 words) - 03:05, 2 April 2009
  • There hasn't been any discussion of the papers Rama suggested for the RCA discussion, but if you read them you'll notice that t
    17 KB (3,069 words) - 01:51, 16 April 2019
  • '''2001''' Rama Balakrishnan SGD, Michelle Gwinn Giglio TIGR, Harold Drabkin MGI
    36 KB (5,808 words) - 06:12, 15 April 2019
  • Pascale G, Rama B: New groups might not be able to handle this. How many new groups are req Rama B: these is a draft web page ready, with the majority of text and examples
    25 KB (4,182 words) - 06:12, 15 April 2019
  • '''2001''' Rama SGD, Michelle TIGR, Harold Drabkin MGI
    32 KB (5,124 words) - 06:12, 15 April 2019
  • ...oday. Create documentation for curators and users (more succinct version) (Rama and the Evidence Code committee) ...ation in only one gene can only be IMP (protein localization IGI example) (Rama)
    4 KB (585 words) - 06:12, 15 April 2019
  • ...web presence group in the advocacy monthly reports. She will contact Ben, Rama and Amelia to ask them to contribute information to the report. ...web presence group in the advocacy monthly reports. She will contact Ben, Rama and Amelia to ask them to contribute information to the report. <br>
    11 KB (1,951 words) - 08:46, 30 June 2014
  • ..."#AB5871">(08:38:09 AM) </font></font><font color="#AB5871"><font size="3">rama:</font></font><font size="3"> no worries</font><br> ..."#AB5871">(08:39:23 AM) </font></font><font color="#AB5871"><font size="3">rama:</font></font><font size="3"> we are waiting for?</font><br>
    26 KB (4,130 words) - 18:19, 8 November 2007
  • # A summary email of of the chat, combined with Ben and Rama's comments, will be sent out for further discussion
    546 bytes (81 words) - 18:18, 8 November 2007
  • ...web presence group in the advocacy monthly reports. She will contact Ben, Rama and Amelia to ask them to contribute information to the report. [not yet do
    5 KB (738 words) - 09:01, 30 June 2014
  • 1669585 Rama, Rob, Val 1237306 Rama, Rob, Val, Simon
    3 KB (447 words) - 03:06, 2 April 2009
  • Seth, Amelia, Rama * Rama said just send mail to group
    756 bytes (121 words) - 19:22, 8 November 2007
  • Rama, Eurie, Mary, Amelia, Seth, Chris
    1 KB (167 words) - 19:22, 8 November 2007
  • Chair: Rama<br> *About meeting Chairs- No body in the group (other than Ben and Rama) was aware of the reverse order of Chairs for Hub and WG meetings. We decid
    4 KB (717 words) - 19:23, 8 November 2007
  • ...that people remember these meetings and call/logon etc without reminders (Rama)
    1 KB (184 words) - 19:24, 8 November 2007
  • ...web presence group in the advocacy monthly reports. She will contact Ben, Rama and Amelia to ask them to contribute information to the report. [not yet do
    3 KB (527 words) - 08:43, 30 June 2014
  • ** Search: Rama/Eurie (Eurie from email)
    1 KB (158 words) - 11:31, 28 November 2007
  • how about rama? is she still away? <val> That leaves search for rama
    8 KB (1,372 words) - 11:32, 28 November 2007
  • 1825979 Val, Rama
    3 KB (427 words) - 03:06, 2 April 2009
  • Seth, Amelia, Rama, Ben, Mary
    606 bytes (82 words) - 17:54, 5 December 2007
  • Seth, Amelia, Rama, Ben, Chris, Suzi
    730 bytes (105 words) - 09:54, 18 December 2007
  • ...web presence group in the advocacy monthly reports. She will contact Ben, Rama and Amelia to ask them to contribute information to the report. Amelia is s
    5 KB (915 words) - 08:37, 30 June 2014
  • 1849534 Donghui, Rama, Karen C
    3 KB (390 words) - 03:06, 2 April 2009
  • Rama ...to proceed with planning. Fiona is going to have a number of meetings with Rama and Harold. Jen also will attend as required. <br>
    4 KB (691 words) - 06:10, 15 April 2019
  • <font size="2">(08:36:46 AM) </font><b><font size="3">rama [<i>rama@c-24-7-123-136.hsd1.ca.comcast.net</i>] entered the room.</font></b><br> ..."#AB5871">(08:36:57 AM) </font></font><font color="#AB5871"><font size="3">rama:</font></font><font size="3"> Hi, sorry I am late</font><br>
    38 KB (5,929 words) - 10:57, 24 January 2008
  • Seth, Ben, Rama
    552 bytes (70 words) - 17:06, 18 March 2008
  • ...ont><font color="#3F1AB3"><font size="3">ben:</font></font><font size="3"> Rama is out</font><br> ...(08:47:07 AM) </font><font size="3">gwg:</font></font><font size="3"> only Rama replied, which was very solicitous of her...</font><br>
    46 KB (7,168 words) - 14:03, 16 July 2014
  • 1909714 Rama 1911964 Rama, Val
    3 KB (411 words) - 03:08, 2 April 2009
  • Rama, Chris, Ben, Jane, Seth, Mary
    1 KB (193 words) - 08:18, 15 April 2008
  • Ben, Seth, Amelia, Rama, Chris
    708 bytes (100 words) - 09:24, 7 May 2008
  • Mary, Seth, Amelia, Rama, Ben
    1 KB (183 words) - 08:14, 16 September 2008
  • ...tation – abbreviated version on web pages and more detailed on GOC Wiki (Rama) 13. Sue, Michelle, Rama put evidence code proposal in the context of what we discussed today
    31 KB (4,938 words) - 06:06, 15 April 2019
  • Seth, Amelia, Rama, Ben, Jane * What is release schedule for current bugfix (rama)
    2 KB (345 words) - 17:08, 20 May 2008
  • Chris, Jane, Amelia, Ben, Rama, Mary
    670 bytes (100 words) - 08:38, 3 June 2008
  • 1969138 Rama, Julie
    3 KB (414 words) - 03:07, 2 April 2009
  • Seth, Amelia, Mary, Chris, Rama, Ben * rama to do a final round for this bug release
    823 bytes (126 words) - 14:13, 17 June 2008
  • * rama to do a final round for this bug release [DONE]
    905 bytes (136 words) - 07:59, 1 July 2008
  • 1508524 Rama 1536003 Rama, Val
    3 KB (430 words) - 03:07, 2 April 2009
  • |Rama Balakrishnan
    9 KB (1,291 words) - 06:06, 15 April 2019
  • 1729553 Rama 1778552 Val, Rama, Karen C
    3 KB (366 words) - 03:10, 2 April 2009
  • rama has joined the channel jenclark: rama is your microphone muted?
    96 KB (16,723 words) - 14:08, 30 June 2014
  • rama has joined the channel rama: John-Boy or Girl?
    37 KB (6,547 words) - 14:08, 30 June 2014
  • rama has joined the channel rama has quit the server saying: Quit: rama
    22 KB (3,784 words) - 14:09, 30 June 2014
  • Amelia, Seth, Rama, Mary
    1 KB (225 words) - 09:06, 5 August 2008
  • I'm not sure my stand it, likely Rama, will get involved with testing, but since SGD is the production environmen OK, sounds good John, but I think Rama will be able to sit in for at least the business part to keep in touch with
    27 KB (3,902 words) - 06:30, 1 July 2014
  • *Should we send people to PAG again this year? If so, then shall we ask Rama again, as she has been doing it for the last few years and has done well. F ...he is happy to take the lead if David helps. She is also going to write to Rama to ask if she will be there this year.
    2 KB (400 words) - 08:30, 30 June 2014
  • Mary, Seth, Amelia, Ben, Rama, Jane *** Rama volunteered
    1 KB (187 words) - 08:04, 19 August 2008
  • #Rama Balakrishnan, Ph.D., Senior Scientific Curator, Saccharomyces Genome Databa
    12 KB (1,521 words) - 05:06, 12 April 2019
  • ...he is happy to take the lead if David helps. She is also going to write to Rama to ask if she will be there this year.
    4 KB (756 words) - 12:02, 7 April 2014
  • (08:43:41 AM) sjcarbon: I guess Rama will be here soon... (08:47:25 AM) rama [rama@c-24-7-118-198.hsd1.ca.comcast.net] entered the room.
    20 KB (3,121 words) - 14:04, 16 July 2014
  • 981451 David, Michelle, Rama 2034849 Rama, John Garavelli
    3 KB (421 words) - 03:11, 2 April 2009
  • Pascale, Ben, Chris, Amelia, Rama, Seth
    854 bytes (126 words) - 11:31, 24 November 2008
  • <font size="2">(08:32:35 AM) </font><b><font size="3">rama [<i>rama@c-24-7-118-198.hsd1.ca.comcast.net</i>] entered the room.</font></b><br> ..."#AB5871">(08:33:31 AM) </font></font><font color="#AB5871"><font size="3">rama:</font></font><font size="3"> hello</font><br>
    36 KB (5,658 words) - 14:05, 16 July 2014
  • 2047476 Rama 2100734 Rama
    4 KB (451 words) - 03:11, 2 April 2009
  • Seth, Mary, Ben, Rama, Chris, Amelia
    1 KB (203 words) - 13:35, 8 October 2008
  • Rama Balakrishnan, Gail Binkley, Karen Christie, Maria Costanzo, Selina Dwight,
    5 KB (696 words) - 07:57, 20 August 2009
  • Seth, Suzi, Siddartha, Pascale, Edith, Michael (Princeton), Amelia, Chris, Rama, ...
    2 KB (253 words) - 09:53, 4 November 2008
  • Rama, Dianna, Rachael, Prudence, Li, Midori, Doug, Becky, Chris, Antonia, Ruth, '''1. GO Mine presentation (Rama)'''
    2 KB (250 words) - 12:28, 9 April 2014
  • edith, michael, kimberly, seth, amelia, pascale, rama, mary
    2 KB (274 words) - 10:46, 18 November 2008
  • Michael, Pascale, Rama, Siddartha, Chris, Seth
    802 bytes (121 words) - 09:45, 25 November 2008
  • <rama> no problem <rama> yes
    10 KB (1,749 words) - 14:05, 16 July 2014
  • 2100763 Karen C, Rama, Val
    3 KB (415 words) - 03:12, 2 April 2009
  • Ben, Seth, Chris, Mary, Rama
    1 KB (189 words) - 09:29, 2 December 2008
  • 2435061 Val, Rama 2435063 Val, Rama
    3 KB (403 words) - 03:11, 2 April 2009
  • Rama Balakrishnan, Gail Binkley, Karen Christie, Maria Costanzo, Selina Dwight,
    5 KB (703 words) - 07:56, 20 August 2009
  • | Rama Balakrishnan | rama@genome.stanford.edu*
    12 KB (1,878 words) - 07:51, 12 April 2019
  • ** Rama: what would the user see? ** Tanya: To answer Rama and Ranjana: people need to use information from the graph anyway
    29 KB (4,509 words) - 06:06, 15 April 2019
  • Seth, Petra, Stacia, Amelia, Chris, Rama, Jane * Rama to send list of WPWGers to Seth
    1 KB (160 words) - 17:16, 27 January 2009
  • ...al;'><font size="2">(08:35:13 AM) </font></span><b><font size="3">rama [<i>rama@c-98-207-117-165.hsd1.ca.comcast.net</i>] entered the room.</font></b><br> ...nt></span><font size="3"><span style='font-weight: normal;color: #ab5871;'>rama: </span>hi there</font><br>
    66 KB (10,007 words) - 14:05, 16 July 2014
  • 2503103 Rama 2507331 Eurie, Rama, Val
    4 KB (473 words) - 03:11, 2 April 2009
  • 2012346 Julie, Rama 2597089 Julie, Rama
    4 KB (470 words) - 03:11, 2 April 2009
  • Seth, Pascale, Amelia, Rama, Chris, Eurie * get rama's rg example queries onto GOOSE example wiki (seth)
    629 bytes (84 words) - 09:50, 24 March 2009
  • ...al;'><font size="2">(08:30:45 AM) </font></span><b><font size="3">rama [<i>rama@cider.Stanford.EDU</i>] entered the room.</font></b><br> ...nt></span><font size="3"><span style='font-weight: normal;color: #ab5871;'>rama: </span>hello</font><br>
    37 KB (5,630 words) - 14:06, 16 July 2014
  • Jane, Seth, Pascale, Amelia, Rama * take a quick look at GOOSE on new site (Rama)
    1 KB (220 words) - 08:13, 28 April 2009
  • ...al;'><font size="2">(08:41:12 AM) </font></span><b><font size="3">rama [<i>rama@cider.Stanford.EDU</i>] entered the room.</font></b><br> ...nt></span><font size="3"><span style='font-weight: normal;color: #ab5871;'>rama: </span>hi there</font><br>
    26 KB (4,000 words) - 14:06, 16 July 2014
  • Rama, Seth, Amelia, Ben, Jane
    3 KB (502 words) - 09:36, 19 May 2009
  • Rama, Seth. * get rama's rg example queries onto GOOSE example wiki (seth)
    810 bytes (112 words) - 07:49, 26 May 2009
  • Mary, Rama, Ben, Seth, Amelia * get rama's rg example queries onto GOOSE example wiki (seth)
    1 KB (151 words) - 08:35, 2 June 2009
  • ...nt></span><font size="3"><span style='font-weight: normal;color: #ab5871;'>rama: </span>seth?</font><br> ...nt></span><font size="3"><span style='font-weight: normal;color: #ab5871;'>rama: </span>okay. sounds good. bye</font><br>
    1 KB (218 words) - 14:06, 16 July 2014
  • Present: Pascale, David, Judy, Emily, Paul S, Rama, Mike C, Chris ==Paper on GAF (Rama)==
    2 KB (382 words) - 11:30, 27 June 2014
  • * get rama's rg example queries onto GOOSE example wiki (seth)
    674 bytes (90 words) - 15:01, 22 June 2009
  • Seth, Amelia, Rama, Ben * Gather data files for automated testing (Seth and Rama)
    948 bytes (138 words) - 08:55, 25 August 2009
  • * get rama's rg example queries onto GOOSE example wiki (seth)
    720 bytes (100 words) - 09:56, 24 August 2009
  • ...al;'><font size="2">(08:33:07 AM) </font></span><b><font size="3">rama [<i>rama@cider.Stanford.EDU</i>] entered the room.</font></b><br> ...nt></span><font size="3"><span style='font-weight: normal;color: #ab5871;'>rama: </span>Good morning</font><br>
    13 KB (1,991 words) - 14:07, 16 July 2014
  • Chris, Jane, Ben, Amelia, Seth, Rama, Edith ** Big testing push: amelia, jane, rama
    2 KB (243 words) - 08:11, 1 September 2009
  • Rama Balakrishnan, Gail Binkley, J. Michael Cherry, Karen Christie, Maria Costan
    4 KB (612 words) - 15:34, 6 March 2020
  • *(Rama)We need an annotation camp. It’s been several years.
    41 KB (6,404 words) - 06:13, 15 April 2019
  • Ben, Jane, Rama, Amelia, Mary, Seth
    1 KB (215 words) - 10:26, 2 February 2010
  • Rama: perhaps at end of year, we could take a break to focus on annotation and e ===Annotation 1: Binding (Rama, Emily) ===
    54 KB (8,575 words) - 07:51, 12 April 2019
  • Ben, Kalpana, Seth, Rama, Jane, Chris, Amelia
    1 KB (150 words) - 14:52, 21 December 2009
  • * rama has joined the room rama: Hello,
    9 KB (1,692 words) - 14:07, 16 July 2014
  • Seth, Amelia, Rama * Rama's edits to 1.7 announcement
    1 KB (213 words) - 10:59, 1 December 2009
  • ...come up with a way to represent the chaing of evidence. '''Action item''': Rama et al will form a working group on chain of evidence/LEGO and come up with
    3 KB (448 words) - 08:20, 8 April 2014
  • * Rama and Eurie on SGD's practice-
    7 KB (1,007 words) - 07:47, 12 April 2019
  • * Chris, Harold, Doug, Rama, Kimberly, Mary, Ruth, Pascale, Jim, Doug, Fiona, Lakshmi, Val, Yasmin, Emi ''Rama:'' Perhaps GO is not the best resource to capture such detail, curators nee
    17 KB (2,801 words) - 09:51, 4 June 2014
  • From Rama Balakrishnan and Julie Park:
    3 KB (441 words) - 14:38, 15 July 2014
  • Rama Balakrishnan*,
    4 KB (526 words) - 15:34, 6 March 2020
  • | Rama Balakrishnan
    9 KB (1,296 words) - 07:48, 12 April 2019
  • *Annotation & Curation (Rama Balakrishnan, Emily Dimmer)
    4 KB (639 words) - 08:50, 30 June 2014
  • * SGD: Julie, Stacia, Rama Rama: technical issues vs are we agreed that we want to create a separate GO_Ref
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  • ben: rama suggested moving the golite (amigo) db load back a day or two so that it wi
    4 KB (716 words) - 10:45, 26 January 2010
  • == Things on Rama's list ==
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  • * SGD: Rama, Julie
    3 KB (393 words) - 07:20, 16 January 2018
  • Participants: David, Kara, Pascale, Judy, Rama, Midori, Jane, Emily
    1 KB (200 words) - 08:45, 30 June 2014
  • # [Rama] Write to Chris, David, Tanya about Inter-ontology links - frequency of upd # [Rama] Organize annotation managers wiki page using what is currently in the Refe
    4 KB (625 words) - 12:24, 9 April 2014
  • Seth, Ben, Rama
    1 KB (196 words) - 09:38, 2 March 2010
  • *** GAF inference and Evidence codes for automated inference (5-10 - Chris, Rama) *** GAF2 update (5-10) CJM/Rama
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  • | Rama '''Chair: Rama Balakrishnan'''
    5 KB (770 words) - 07:48, 12 April 2019
  • == InterOntology links / annotations - Rama, Tanya, David email==
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  • Mary, Rama, Chris, Seth, Amelia * rama to try another icon mockup
    1 KB (195 words) - 15:40, 16 March 2010
  • ...d contributing resources. Rama Balakrishnan (15 min) Presentation: [[File: Rama-intro-to-annotation.pdf]] *'''Chairs: Rama Balakrishnan and TBA from Swiss-Prot'''
    10 KB (1,338 words) - 06:07, 15 April 2019
  • ...er, Pascale Gaudet, Rachael Huntley, Yasmin Alam-Faruque, Varsha Khodiyar, Rama Balakrishnan, Ruth Lovering, Kimberly Van Auken (minutes) ''Rama:'' Is receptor internalization a consequence of the kinase activity?
    37 KB (6,032 words) - 07:48, 12 April 2019
  • Present: Ruth Lovering (Chair), Rama, Jodi, Jim Hu, Li, Becky Rama: tool being developed to create these reciprocal annotations. This was a so
    37 KB (5,727 words) - 07:47, 12 April 2019
  • | Rama
    31 KB (5,006 words) - 07:47, 12 April 2019
  • # (Rama:) Interpretation of author statements: Authors very often use the word comp Peter, Judy, Suzi, Rama, Pascale, Emily, Harold, Diana, Serenella, Cecilia, Chris.
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  • Participants: Rama, Kara, Pascale, Suzi, Judy, Midori, Emily, Chris Rama - communicating with Vinoid from the M.tuberculosis annotation jamboree eff
    4 KB (524 words) - 08:45, 30 June 2014
  • Seth, Sven, Pascale, Amelia, Ben, Rama, Chris
    1 KB (166 words) - 10:48, 23 March 2010
  • - rama has joined the room rama: hi
    10 KB (1,716 words) - 14:07, 16 July 2014
  • Minutes: Rama Present: Rama, Emily, Jane, MikeC, David, Judy, Suzi, Pascale<br>
    3 KB (492 words) - 09:00, 30 June 2014
  • #* Rama: perhaps at end of year, we could take a break to focus on annotation and e ===Annotation 1: Binding (Rama, Emily) ===
    49 KB (7,813 words) - 08:29, 8 April 2014
  • - Association file Readme updates (Rama)- oops, i was thinking of a SOP document that we put together some time bac *Rama- High-throughput working group
    2 KB (308 words) - 12:11, 9 April 2014
  • ...t "ATP hydrolysis" is an exact synonym. Pascale has sent this question to Rama and Emily.
    11 KB (1,795 words) - 05:53, 15 April 2019
  • Participants: Kara, Jane, Rama, Chris, Suzi, Mike, Pascale Agenda: Rama
    2 KB (323 words) - 11:21, 27 June 2014
  • Action: Emily to send Rama email addresses for working groups ...amp and ECO discussion. Move to issues page, to be resolved later. Action: Rama.
    1 KB (168 words) - 12:12, 9 April 2014
  • * rama to try another icon mockup
    2 KB (258 words) - 13:31, 29 April 2010
  • * pasc: Rama said she can't make it
    4 KB (630 words) - 14:08, 16 July 2014
  • * Rama Balakrishnan
    12 KB (1,905 words) - 05:53, 15 April 2019
  • ...</span>@<span class="place">genome.stanford.edu</span> (<span class="name">Rama Balakrishnan</span>)</span> (SGD) ...</span>@<span class="place">genome.stanford.edu</span> (<span class="name">Rama Balakrishnan</span>)</span> (SGD)
    13 KB (1,980 words) - 15:22, 6 March 2020
  • ** Rama: Should curators keep on requested GO Complexes terms? Judy, yes, we need t
    3 KB (514 words) - 11:38, 27 June 2014
  • * SGD: Rama, Julie # HTP: Rama Balakrishnan (Wiki page: [[2010_GO_camp_Annotation_of_HTP_data]])
    2 KB (289 words) - 07:20, 16 January 2018
  • Present: Varsha, Becky, Pascale, Karen, Yasmin, Ruth, Li, Rama, Michele G. * Rama, Karen and Li would NOT use response to in this situation.
    3 KB (466 words) - 04:46, 16 April 2019
  • * Discuss Roadmap for Annotation Advocacy group (rama) | ...ce code ECO proposal- who should take the initiative to move this forward (Rama)
    660 bytes (99 words) - 12:13, 9 April 2014
  • Rama: both running and generating scripts. Rama: email OEWG
    6 KB (1,020 words) - 11:31, 27 June 2014
  • ...annotation sessions (Yasmin has agreed for 'downstream effects'). (Action: Rama) - Rama: sent mail to Chris and Michelle (no response yet)
    1 KB (215 words) - 12:10, 9 April 2014
  • * SGD: Rama, Julie # HTP: Rama Balakrishnan (Wiki page: [[2010_GO_camp_Annotation_of_HTP_data]])
    2 KB (353 words) - 07:19, 16 January 2018
  • Present: Rachael, Rama, Emily - Rama: perhaps on the main horizaontal list on the GOC pages - instead of documen
    1 KB (225 words) - 12:11, 9 April 2014
  • Present: David, Judy, Suzi, Rama, Pascale, Emily '''ACTION:''' Rama to add this to the AmiGO working group agenda to discuss further.
    3 KB (457 words) - 11:46, 27 June 2014
  • *** Rama's list * rama to try another icon mockup
    1 KB (227 words) - 08:33, 15 June 2010
  • Ben, Seth, Rama, Amelia ** Largely unknown, but Rama will be available
    1 KB (195 words) - 08:19, 22 June 2010
  • - ACTION for Rama. GO Camp: Need to collect all talks and summary slides on wiki page and put ...Proposal to close all mailing lists and have one annotation mailing list. Rama to send email to Manager's list to propose merging certain mailing lists. S
    1 KB (178 words) - 12:23, 9 April 2014
  • - rama has joined the room rama: morning
    6 KB (1,089 words) - 14:08, 16 July 2014
  • '''ACTION:''' Rama to add this to the AmiGO working group agenda to discuss further. Rama and Pascale
    4 KB (625 words) - 11:32, 27 June 2014
  • ...QCs for filtering script, can go in Mike's script, send email to GO list. Rama to document soft QC checks from GO camp. Rama to send mail to Mike about email lists. Make new list GO Discussions or use
    755 bytes (129 words) - 12:13, 9 April 2014
  • * 1:00-2:30: [[Annotation Advocacy and Coordination|Annotation]] Report (Rama & Rachael)- [[File: BHB2010.pdf]] *#* Annotation & reference genome groups communication (Pascale and Rama)
    5 KB (630 words) - 12:13, 7 April 2014
  • Present: Suzi, Judy, Pascale, Rama, Rachel, David
    2 KB (302 words) - 11:20, 27 June 2014
  • Seth, Ben, Chris, Rama. * Rama to see who is available for testing.
    1 KB (156 words) - 07:56, 27 July 2010
  • - rama has joined the room rama: hello
    3 KB (461 words) - 07:53, 27 July 2010
  • |Rama Balakrishnan
    7 KB (1,136 words) - 07:51, 12 April 2019
  • * SGD: Rama
    6 KB (874 words) - 07:19, 16 January 2018
  • - Write to all mailing lists to announce merge. Rama to check with Mike whether we should sign up or be automatically signed up. - Rama will send out email
    541 bytes (93 words) - 12:10, 9 April 2014
  • ...annotation_related mailing list was agreed upon at the last Managers call. Rama will make an announcement about the merge and the merge will potentially ha *Rama is looking into reorganizing the Annotation_documentation section on the GO
    889 bytes (131 words) - 05:17, 15 April 2019
  • ...) [Working group to be established; including Harold and Amelia]. Manager: Rama and Emily ...working group to investigate revamp of evidence codes. Manager: Emily and Rama
    2 KB (250 words) - 16:37, 8 April 2014
  • Present: Judy, Kara, Pascale, Rachael, Rama, Chris ...We will ask MODs to prepare one and get them on the wiki before Dec 2010. Rama will create a page for GRANT 2010 and add links.
    2 KB (276 words) - 08:19, 27 June 2014
  • Rama Balakrishnan, Gail Binkley, J. Michael Cherry, Karen Christie, Maria Costan
    4 KB (574 words) - 15:34, 6 March 2020
  • ...) [Working group to be established; including Harold and Amelia]. Manager: Rama and Emily. ...working group to investigate revamp of evidence codes. Manager: Emily and Rama
    2 KB (357 words) - 12:12, 9 April 2014
  • ...e GOA database. The annotations were reviewed by Rachael Huntley (GOA) and Rama Balakrishnan (SGD) and were deemed to be of high-quality. Almost 5800 annot
    9 KB (1,422 words) - 11:52, 9 April 2014
  • Rama about these and we have both spot-checked quite a few of the in column 16. Rama and I feel that these mistakes could be corrected
    3 KB (534 words) - 11:19, 27 June 2014
  • Rama
    2 KB (249 words) - 07:19, 16 January 2018
  • ...e approx. 6000 annotations of which ~3000 are from high-throughput papers. Rama and Rachael checked many of the annotations which were of high-quality. Aft
    905 bytes (128 words) - 05:16, 15 April 2019
  • **Files are in CVS now. Rama will follow up with Chris to see if an email can be fired when new files ge * ECO proposal -sent mail to Chris and Michelle (no response yet)- Rama will follow up with Chris etc. Possibly wrap into Chain of evidence proposa
    2 KB (266 words) - 12:23, 9 April 2014
  • ...ing group on evidence codes: proof of principle for chain of evidence: WG: Rama (will follow up), Paul, Alex, Suzi, Peter D? other curators? (including Le * We had a phone call yesterday (Pascale, Kara, Mike L, Paul, Mike C, Rama) ; see notes [[21_SEPT_2010_RefGen_Priorities_Discussion]]
    4 KB (574 words) - 11:28, 27 June 2014
  • (Rama) ...An automated script tests a lot of things, when moved to Stanford servers Rama tests again then sends out email to ask for more testing. Suzi recommends t
    4 KB (769 words) - 11:37, 27 June 2014
  • * Pascale started to train Rama to use PAINT.
    165 bytes (20 words) - 06:40, 16 January 2018
  • Pascale, Kara, Mike L, Paul T, Rama
    16 KB (2,373 words) - 07:18, 16 January 2018
  • ====Annotation Advocacy Group Report (Rama)==== Rama went through the recent accomplishments of the annotation advocacy group. O
    29 KB (4,786 words) - 08:22, 8 April 2014
  • ...base. The annotations were reviewed by Rachael Huntley (UniProtKB-GOA) and Rama Balakrishnan (SGD) and were deemed to be of high-quality. The annotations w * Together with Rama Balakrishnan from SGD, Emily Dimmer is a manager for the GO Consortium's An
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  • ...on yeast transcription and send their annotations to Rama by 5th November. Rama will collate the annotations and a call-based discussion will happen on 8th
    2 KB (253 words) - 05:16, 15 April 2019
  • Rama waiting to hear from Mike. Rama and Pascale to send comments to Rachael.
    2 KB (337 words) - 12:22, 9 April 2014
  • Kara Dolinski, Pascale Gaudet, Rachel, Jane, David Hill, Rama, Chris, Mike C, Judy, Suzi, Paul Sternberg, Paul Thomas *Updating annotation documentation: Rama. Talking to Amelia about final touches (tabs on pages); text is good to go
    3 KB (411 words) - 11:21, 27 June 2014
  • Present: SGD- Rama, Karen, Julie, Jodi, Ruth, Rachael, Yasmin, Kimberly, Stan, Tim, Tom, Shur- ...y of the month). If any of you have issues with this schedule please email Rama and Rachael.<br>
    18 KB (2,920 words) - 11:42, 9 April 2014
  • ...MF-BP inferences are on the FTP site? Are there any technical questions? -Rama
    2 KB (341 words) - 12:29, 9 April 2014
  • * SGD: Rama Rama, Li, Dmitry, and maybe others will start doing tree annotations. In Decembe
    2 KB (389 words) - 07:15, 16 January 2018
  • * Rama and Karen had a phone conference call with Michelle and Marcus about ECO. W ...currently listed as a soft QC. They are of the kind 'resolution deferred'- Rama will fix the specs page to reflect this difference.
    10 KB (2,007 words) - 11:09, 27 June 2014
  • ...e GOA database. The annotations were reviewed by Rachael Huntley (GOA) and Rama Balakrishnan (SGD) and were deemed to be of high-quality. Almost 5800 annot
    9 KB (1,278 words) - 11:47, 9 April 2014
  • ...to Mike Livstone, 4 other curators have been trained to do PAINT curation: Rama Balakrishnan, Varsha Khodiyar, and (Nov 19) Li Ni and Dmitry Sitnikov
    10 KB (1,317 words) - 06:39, 16 January 2018
  • Jane, Emily, Rama, David, Mike, Chris, Paul T and Paul S
    2 KB (431 words) - 11:13, 27 June 2014
  • Rama Balakrishnan,
    5 KB (731 words) - 15:34, 6 March 2020
  • ...the [http://www.geneontology.org/GO.annotation_qc.shtml RuleEngine page] (Rama, Amelia), GO taxon contraints reviewed for manual annotations in the GOC, f ...el organisation of pages (Rama, Emily, Rachael, Harold?) and page display (Rama and Amelia)
    4 KB (534 words) - 06:26, 8 April 2019
  • * Rama
    3 KB (536 words) - 07:15, 16 January 2018
  • Emily, Pascale, Rama, Chris, Paul S, Suzi, Judy, David, Paul T * Rama? Make the meeting rota for 2011
    4 KB (633 words) - 10:39, 27 June 2014
  • - Rama to send her month's of stats - and Emily to generate first draft web page f
    334 bytes (62 words) - 12:22, 9 April 2014
  • Present: Pascale, Rama, Judy, Paul S, David, Kara, Suzi, Paul T, Emily
    3 KB (567 words) - 08:21, 27 June 2014
  • David, Rachael, Paul T., Judy, Kimberly, Rama, Chris, Huaiyu, Paul S., Pascale. # CANTO deployment (Chris, Seth, Kim, Rama)
    5 KB (677 words) - 10:00, 7 May 2014
  • * InterPro-source advocated for InterPro2GO etc. Emily to send Rama a draft
    668 bytes (89 words) - 12:24, 9 April 2014
  • ==Paper on GAF (Rama)==
    2 KB (323 words) - 08:17, 27 June 2014
  • ** not discussed today but a very nice example from Rama - sequence is extremely conserved, annotation to AN0 can be done even thoug
    4 KB (599 words) - 07:15, 16 January 2018
  • ** AI: Karen will check with Rama about whether the AmiGO hub meetings are still active, then we can make a d
    8 KB (1,280 words) - 13:46, 30 June 2014
  • * Rama: Document cron job for trees * Rama: Everyone needs to communicate to the software team to upload the MF-BP inf
    3 KB (461 words) - 07:14, 16 January 2018
  • ==Paper on GAF (Rama)==
    4 KB (626 words) - 11:28, 27 June 2014
  • (Rama, Emily, Pascale) [http://wiki.geneontology.org/index.php/Annotation_Advocac ===10:15 Community resources and Dissemination (Emily & Rama)===
    9 KB (1,140 words) - 08:34, 8 April 2014
  • * Rama SGD ...upload the MF-BP inferences on the FTP site (ADD LINK TO DOCUMENTATION). (Rama, everyone) On hold. Chris wants people to make the annotations manually on
    4 KB (591 words) - 07:14, 16 January 2018
  • ...anization of curator guidelines in the GO Consortium annotation web pages (Rama)- http://www.geneontology.org/newIndex.shtml
    2 KB (276 words) - 12:36, 9 April 2014

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