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  • * Members: David, Jim, Kimberly, Pascale, Seth, Suzi, Huaiyu, Paul, Chris, Cynthia * Present: David, Jim, Kimberly, Pascale, Seth, Suzi, Huaiyu, Paul, Cynthia ...
    1 KB (155 words) - 06:31, 1 December 2023
  • ==David OS update on latest projects== *On call: Barbara, Chris, David H., Eric, Harold, Jim, Karen, Kimberly, Pascale, Suzi, Tanya ...
    353 bytes (43 words) - 12:23, 8 September 2017
  • wc Jan 27 David H wc Feb 3 David OS ...
    878 bytes (151 words) - 12:39, 14 July 2014
  • ...members:''' Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris, Paul * '''Regrets: ''' David, Peter, Chris, Jim ...
    212 bytes (26 words) - 10:47, 25 July 2022
  • ...members:''' Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Val, Chris, Paul ...Present:''' Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Val, Chris, ...
    518 bytes (70 words) - 01:25, 21 September 2022
  • * David reviewed the inferences, but it would be nice to have for example Val's opi * Next: David met last week with Val. He will create a page in the spreadsheet that has t ...
    896 bytes (124 words) - 14:15, 3 May 2019
  • ===David and Kimberly to NYC=== * David and Kimberly will visit Peter Thursday and Friday to discuss the Reactome i ...
    1,007 bytes (142 words) - 17:11, 22 February 2019
  • *BPxBP (BP involved_in BP) cross-products added, QC ongoing [David, Chris and Tanya] ...GO TermGenie] logins now available for all ontology editors. [Chris, Seth, David, Jane, Tanya] ...
    1 KB (152 words) - 13:36, 20 October 2010
  • ==David OS update on latest projects== ...
    292 bytes (36 words) - 11:14, 14 September 2017
  • ===OWL for annotators (David OS)=== ...
    440 bytes (59 words) - 09:47, 15 April 2019
  • ===David and Kimberly to NYC=== * David and Kimberly will visit Peter at the end of the month to discuss the Reacto ...
    1 KB (172 words) - 13:11, 11 February 2019
  • * More kidney terms [David, Midori, Yasmin] ...l_terms_in_GO]] - continuing to edit the GOCHE ontology (chemicals in GO) [David, Tanya, Jane & Harold] ...
    2 KB (214 words) - 11:27, 3 June 2010
  • Attendees:David H, Harold, Paola, Heiko Minutes:David H ...
    307 bytes (46 words) - 06:15, 14 August 2015
  • * David reviewed the inferences. * David has created a subset of the current inferences that focus on the cell cycle ...
    1 KB (190 words) - 10:51, 10 May 2019
  • ...revamp (BP & MF) in preparation for transcription meeting in Spain, June [David & Karen] ...ks between transporter activities and transport processes almost finished [David & Tanya] ...
    2 KB (276 words) - 10:57, 8 June 2010
  • *[[Kidney_Development|Kidney development]]: mesonephros terms are done [David and Yasmin] *BPxBP (BP involved_in BP) clean-up for parsing is done [David and Tanya] ...
    2 KB (249 words) - 09:58, 16 September 2010
  • * Members: Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia, David, Jim * Present: Huaiyu, Kimberly, Pascale, Seth, Jim, Paul, Cynthia, Chris, David, ...
    639 bytes (79 words) - 11:15, 14 June 2023
  • **Personnel: Harold, Peter, Ben, David **Personnel: Jim, David, Tanya, Val, Barbara ...
    2 KB (218 words) - 12:35, 16 December 2019
  • Meeting canceled since only Rama and David were the only ones attending. (Emily and David) ...
    735 bytes (107 words) - 12:13, 27 June 2014
  • **David and Tanya have continued to clean up errors reported by Chris' QC script. T **Midori and David have tackled the last of the disjoint violations with the help of Alex on t ...
    3 KB (382 words) - 07:08, 2 April 2009
  • ...lular_component_processes|processes affecting cellular components]] (Jane, David, Midori, Val, et al.) ...t notes at [[Signaling_Meeting_Minutes_April_2008_-#22nd_September]] (Jen, David) ...
    4 KB (451 words) - 07:11, 2 April 2009
  • * Members: Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia, David, Jim * Regrets: Paul, David ...
    680 bytes (94 words) - 11:03, 24 May 2023
  • ...oup members:''' Pascale, Raymond, Val, Edith, Jim, Tanya, Kimberly, Peter, David, Chris, Paul * '''Present:''' Pascale, Raymond, Val, Edith, Jim, Kimberly, Peter, David, Chris, ...
    557 bytes (76 words) - 09:13, 23 May 2023
  • * Editing GOCHE [David, Harold, Jane, Midori, Tanya, Chris] ...ranscription overhaul, 3 existing terms clarified, 37 new terms [Karen and David] ...
    1 KB (156 words) - 17:16, 9 December 2010
  • ...ternal_Cross_Products]] and [[Editors_cross-product_implementation_plan]] (David, Midori, Jane, Jen, Chris) ...lular_component_processes|processes affecting cellular components]] (Jane, David, Midori, Val, et al.) ...
    3 KB (403 words) - 07:11, 2 April 2009
  • Participants: David, Kara, Pascale, Judy, Rama, Midori, Jane, Emily Agenda: David ...
    1 KB (200 words) - 12:45, 30 June 2014
  • * Kidney terms finished [David] * Editing GOCHE [David, Harold, Jane, Midori, Tanya, Chris] ...
    1 KB (178 words) - 16:36, 9 December 2010
  • == InterOntology links / annotations - Rama, Tanya, David email== ...
    260 bytes (32 words) - 16:12, 9 April 2014
  • (with David Hill) April 1st 2009 -> This project has been taken over by David Hill and Tanya Berardini. ...
    1,010 bytes (151 words) - 09:57, 8 July 2019
  • * Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia * Present: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia ...
    1 KB (199 words) - 08:28, 2 December 2022
  • *F-P links for all of the transporters/transport [David & Tanya] ...n transcription, e.g. promoter, transcription factor binding site, etc.). [David & Karen] ...
    2 KB (334 words) - 08:26, 7 July 2010
  • * Members: David, Jim, Kimberly, Pascale, Seth, Suzi, Huaiyu, Paul, Chris, Cynthia ** PO: David and Kimberly ...
    2 KB (285 words) - 11:32, 30 August 2023
  • * Members: David, Jim, Kimberly, Pascale, Seth, Suzi, Huaiyu, Paul, Chris, Cynthia David retiring Dec 22 ...
    1 KB (140 words) - 08:45, 27 November 2023
  • ...affecting cellular components]] - briefly presented at GOC meeting (Jane, David, Midori, Val, et al.) ...#October_2008]]; high-level terms proposed and agreed at GOC meeting (Jen, David) ...
    3 KB (373 words) - 07:12, 2 April 2009
  • ...has been sent out to GOC for comments. Almost ready to proceed with edits [David & Karen] ...s fixed), now need to look at the reasoner results and fix up the details [David & Tanya] ...
    2 KB (339 words) - 14:45, 6 August 2010
  • Participants: Midori, Jane, Pascale, Jen, David, Judy, Jane, Chris ...avid, Chris''': organize the xp webex. (There has been a great tutorial by David OS at the Buffalo Ontology meeting) ...
    2 KB (245 words) - 12:51, 30 June 2014
  • ...l_terms_in_GO]] - continuing to edit the GOCHE ontology (chemicals in GO) [David, Tanya, Jane & Harold] ...9#Status_overview_and_release_plan|plan to add internal cross-products]]. [David & Tanya] ...
    2 KB (286 words) - 06:03, 14 April 2010
  • * Members: David, Jim, Kimberly, Pascale, Seth, Suzi, Huaiyu, Paul, Chris, Cynthia * Present: David, Kimberly, Pascale, Seth, Jim, Huaiyu, Paul, Suzi, Cynthia ...
    3 KB (348 words) - 12:07, 13 September 2023
  • ...David had to say about the muscle plasticity terms (summarized; I'm ccing David in case I've missed anything): ...ould make the terms part_of 'regulation of muscle plasticity'. The wording David suggests is 'muscle plasticity in response to stimulus'; it's analogous to ...
    3 KB (423 words) - 11:41, 16 April 2019
  • ...ternal_Cross_Products]] and [[Editors_cross-product_implementation_plan]] (David, Midori, Jane, Jen, Chris) ...lular_component_processes|processes affecting cellular components]] (Jane, David, Midori, Val, et al.) ...
    3 KB (415 words) - 07:12, 2 April 2009
  • ...hips within MF and between MF and BP are planned, and have been announced (David, Tanya) ...lular_component_processes|Processes affecting cellular components]] (Jane, David, Midori, Val, et al.) ...
    3 KB (421 words) - 07:11, 2 April 2009
  • Present: Midori Harris, David Hill, Jen Clark, Jane Lomax, Amelia Ireland, Tanya Berardini ## Action item: David will write the documentation, Amelia will put it up on the web. ...
    1 KB (173 words) - 11:04, 8 April 2014
  • On call: Chris, Dan, David H., Giulia, Helen, Judy, Kimberly, Melanie, Midori, Paul T., Seth, Stacia, *David and Kimberly will collate issues and put together a list of priority items ...
    551 bytes (81 words) - 11:42, 20 June 2016
  • ...avid, Chris''': organize the xp webex. (There has been a great tutorial by David OS at the Buffalo Ontology meeting) ...
    657 bytes (93 words) - 12:22, 30 June 2014
  • *On call: Barbara, Chris, David H., Eric, Harold, Jim, Kimberly, Pascale **Topics have been put into an agenda, but Chris and David OS will review again on Monday ...
    1,023 bytes (142 words) - 12:17, 11 August 2017
  • * Members: Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia, David, Jim * Present: Pascale, Seth, Jim, David, Paul, Suzi, Cynthia ...
    705 bytes (99 words) - 11:46, 28 June 2023
  • #REDIRECT [[Muscle biology - David Hill - Muscle Plasticity]] ...
    61 bytes (9 words) - 11:40, 16 April 2019
  • Minutes: <strike>David</strike> Midori Apologies from Pascale, David, Judy, Michael, Suzi, Mike, Jane ...
    777 bytes (112 words) - 15:48, 27 June 2014
  • **LOTS of progress on regulation! Chris, David and Tanya have made numerous improvements in the "live" GO file to add miss 1371173 David ...
    3 KB (434 words) - 07:08, 2 April 2009
  • * Present: David, Kimberly, Pascale, Suzi, Seth, Cynthia, Chris * Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia ...
    2 KB (242 words) - 13:14, 2 February 2022
  • |Harold, David, Tanya, Jane, Chris |Amelia, Chris, David, Jane, Tanya, Becky, Paola ...
    3 KB (320 words) - 10:50, 10 February 2023
  • * Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia * Present: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia ...
    1 KB (191 words) - 10:44, 17 April 2023
  • Present: Judy, Chris, David, Jane, Emily - David is working on this over the next few weeks. He would welcome comments/sugge ...
    783 bytes (121 words) - 12:21, 27 June 2014
  • ...cellular components]] - meeting July 9, with follow-up work planned (Jane, David, Midori, Val, et al.) ...ntinuing; latest notes at [[Signaling_Meeting_Minutes_April_2008_-]] (Jen, David) ...
    3 KB (366 words) - 07:10, 2 April 2009
  • * Members: Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia, David, Jim * Present: Huaiyu, Kimberly, Pascale, Seth, Cynthia, David, Paul, Suzi, Chris, Jim ...
    1,011 bytes (136 words) - 11:04, 31 May 2023
  • * Minutes: David Kimberly, Pascale, David, Laurent-Philippe, Seth ... ...
    1 KB (174 words) - 11:31, 10 July 2019
  • * Members: Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia, David, Jim * Present: Kimberly, Pascale, Seth, Jim, David, Paul ...
    679 bytes (90 words) - 09:00, 28 June 2023
  • ===Minutes from GO Manager's conference call July 19 (David)=== **E. Midori and David will go through a requirements list for a new tracker. (in progress) ...
    1 KB (222 words) - 12:38, 30 June 2014
  • Pascale, Karen, Harold, Peter, Jim, David, Chris, Kimberly Pascale, Karen, Harold, Peter, Jim, Tanya, Kimberly, David, Chris, Paul ...
    567 bytes (68 words) - 12:12, 26 October 2020
  • **Signal transduction overhaul continuing (Jen, David) 1979329 Tanya, David ...
    3 KB (414 words) - 07:07, 2 April 2009
  • David met at wisconsin physiology experts to work on David spent first morning explaining things, graphs, rules, learning ...
    2 KB (302 words) - 13:01, 30 June 2014
  • Pascale, David, Peter, Harold, Karen, Kimberly, Jim, Chris Pascale, Karen, Harold, Peter, Jim, Tanya, Kimberly, David, Chris, Paul ...
    391 bytes (46 words) - 15:13, 9 November 2020
  • Minutes: David Present: David, Midori, Jen, Jane, Pascale, Mike ...
    1 KB (189 words) - 12:36, 30 June 2014
  • * Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia * Present: David, Huaiyu, Pascale, Seth, Suzi, Chris ...
    747 bytes (99 words) - 01:05, 18 May 2022
  • * David reviewed (and removed) a number of inferences, but it would be nice to have ** Once David, Barbara, and Tanya are happy with the existing inferences, show to other p ...
    1,021 bytes (140 words) - 12:42, 29 April 2019
  • * Biologists categorize unassignable (Tanya Berardini, David Hill) '''DONE''' ** David has gone through this list and noted the following. ...
    4 KB (619 words) - 10:23, 9 February 2023
  • ...the ontology that have been made since the last time this report was run. David will check these out in more detail and will contact the appropriate expert ...
    894 bytes (134 words) - 09:00, 3 January 2020
  • * Present: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Chris * Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris ...
    870 bytes (115 words) - 11:44, 6 October 2021
  • Present: Suzi, Rachael, Jane, David ...t with Chebi to sort out inconsistent issues in GO. Chebi people will join David etc. to discuss differences/similarities in chemical representations. Aim t ...
    2 KB (420 words) - 12:20, 27 June 2014
  • ...ntinuing; latest notes at [[Signaling_Meeting_Minutes_April_2008_-]] (Jen, David) 1407482 David, Tanya ...
    3 KB (430 words) - 07:07, 2 April 2009
  • *David Hill (MGI) ====Transcription overhaul (Karen, David):==== ...
    2 KB (285 words) - 10:45, 24 November 2011
  • |January 24 || Karen and David (MGI) || || Kimberly (WB) || [http://noctua.berkeleybop.org/editor/graph/go |April 25 || Annotating (Binary) States - David (MGI) || [http://noctua.berkeleybop.org/editor/graph/gomodel:586fc17a000010 ...
    1 KB (155 words) - 05:49, 16 April 2019
  • Minutes: David *'''David and Tanya:''' Find different example for BP-MF links email. [Done] ...
    2 KB (400 words) - 12:30, 30 June 2014
  • * Members: Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia, David, Jim * Regrets: (??) Paul, Chris, David, ...
    1 KB (156 words) - 14:45, 23 May 2023
  • '''Prepared and Submitted by David Hill''' *David Hill (MGI) ...
    3 KB (377 words) - 07:42, 24 November 2011
  • **David and Tanya are keeping track of rules they've applied in working on Chris' f **Electron transport terms are being reorganized (David, Jen, Pascale, Jim, Michelle, and Debby Siegele) ...
    3 KB (390 words) - 07:06, 2 April 2009
  • ...ss_xp_chebi|cross-products]] (Midori, Chris, Jane, David, ChEBI curators); David and Tanya visiting Cambridge in March to standardize GO implicit chemical o ...elopment|Kidney development]] meeting follow-up work in progress [Midori & David] ...
    3 KB (459 words) - 10:10, 16 March 2010
  • * Present: Chris, Kimberly, David, Jim, Seth, Huaiyu, Suzi ...
    462 bytes (57 words) - 11:06, 2 August 2023
  • **Terms added from ASCB - [[ASCB_2009]] (David, Tanya) ...ase_plan|plan to add internal cross-products]]. (Jen, Jane, Midori, Chris, David, Tanya) ...
    3 KB (430 words) - 15:01, 1 February 2010
  • * Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia * Present: David, Kimberly, Pascale, Seth, Suzi, Paul, Cynthia ...
    2 KB (230 words) - 02:47, 17 November 2022
  • Attendees: Paola, Melanie, Heiko, Tanya, Harold, David OS, David H David OS, Melanie and Paola took part in a "documentation week" with the SPOT gro ...
    2 KB (269 words) - 05:20, 15 January 2016
  • * Present: David, Huaiyu, Pascale, Seth, Suzi, Paul, Chris * Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris ...
    946 bytes (137 words) - 13:02, 4 August 2021
  • ...for work on morphogenesis -- Jonathan Bard has offered to collaborate with David and other GO curators to improve GO's representation ...
    161 bytes (24 words) - 09:32, 16 December 2008
  • * Members: Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia, David, Jim * Regrets:David, Cynthia, Paul, Seth, ...
    1 KB (144 words) - 06:04, 13 July 2023
  • Present: Midori Chris David Suzi Pascale Jen *'''David, Tanya, Jane:''' Compose wiki documentation for ontology editors, with step ...
    2 KB (370 words) - 12:37, 30 June 2014
  • 1902160 David 1912054 David ...
    3 KB (419 words) - 07:07, 2 April 2009
  • On call: Chris, David, Heiko, Kimberly, Paul T., Rama, Seth **David - lots of spaces in GAF ...
    1 KB (195 words) - 11:17, 19 October 2015
  • * Members: Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia, David, Jim * Present: Pascale, Cynthia, David, Jim, Huaiyu, Seth, Chris, ...
    1,001 bytes (142 words) - 11:08, 19 July 2023
  • * Members: Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia, David, Jim * Present: Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia, David, Jim ...
    1 KB (226 words) - 12:08, 10 May 2023
  • Participants: Paul D, Marc F, David H, Ruth, Paola and community experts ...
    330 bytes (52 words) - 01:03, 10 March 2020
  • * Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia ...
    317 bytes (42 words) - 04:10, 31 August 2022
  • **Extensive progress preparing for MF-MF and MF-BP regulates links (Chris, David, Tanya, Jane) ...ternal_Cross_Products]] and [[Editors_cross-product_implementation_plan]] (David, Midori, Jane, Jen, Chris, Tanya) ...
    4 KB (473 words) - 07:11, 2 April 2009
  • ...hen I closed and opened the file in Protege, I could then see the errors. (David) ...regenerated a lot of import files with ontobot, seems to be working great, David will start to assign specific people to different external ontologies. THin ...
    1 KB (223 words) - 08:13, 22 July 2019
  • Participants: Chris, Midori, Jen, David, Jane Minutes: David ...
    2 KB (391 words) - 12:23, 30 June 2014
  • ...oup members:''' Pascale, Raymond, Val, Edith, Jim, Tanya, Kimberly, Peter, David, Chris, Paul * '''Present:''' Raymond, Edith, Chris, Peter, David, Jim, Kimberly, Tanya ...
    1 KB (142 words) - 12:08, 31 July 2023
  • ...ion, sphingolipid metabolism, organelle fission/fusion, eye morphogenesis (David, Tanya) ...ase_plan|plan to add internal cross-products]]. (Jen, Jane, Midori, Chris, David, Tanya) ...
    3 KB (414 words) - 10:25, 4 January 2010
  • ...ome up with a stats table by Monday morning. Everyone will get comments to David by the end of the week. He will send out an updated version early next week * DONE, David submitted last week ...
    2 KB (295 words) - 15:27, 27 June 2014
  • * Present: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris * Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris ...
    2 KB (237 words) - 00:57, 2 September 2021
  • * Minutes: David * Present: David, Pascale, Kimberly, Seth, Laurent-Philippe, Huaiyu, Suzi A, Chris, Paul T ...
    2 KB (255 words) - 11:33, 23 October 2019
  • ...rkshop|heart development content meeting]] held at UCL September 22, 2009 (David, Varsha, Doug, et al.) ...ess]] part-of links in gene_ontology_write.obo and gene_ontology_ext.obo (David, Tanya) ...
    3 KB (352 words) - 10:26, 30 November 2009
  • ...members:''' Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris, Paul ...esent:''' Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris ...
    2 KB (231 words) - 01:41, 20 April 2022
  • #David Hill, Jackson Laboratory We are ran a lung content meeting on the 5-6th December in Boston. David is making the initial edits based on a graph left by a summer student. Jenn ...
    1 KB (230 words) - 18:26, 26 April 2010
  • David Osumi-Sutherland, FlyBase<br> David Osumi-Sutherland, FlyBase.<br> ...
    2 KB (229 words) - 15:31, 30 June 2014
  • Participants: Midori, Jane, Pascale, Jen, David, Judy David: Which evening is the "Consortium dinner"? ...
    3 KB (424 words) - 12:33, 30 June 2014
  • * Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia * Present: David, Huaiyu, Kimberly, Pascale, Seth, Paul, Chris, Cynthia ...
    1 KB (163 words) - 11:03, 19 April 2023
  • |Harold, David, Tanya, Jane, Chris |David, Tanya, Jane, Chris ...
    4 KB (491 words) - 10:50, 10 February 2023
  • Attending: Suzi, Chris, Rama, David H, Huaiyu, Jane, Kimberly ...
    254 bytes (42 words) - 09:45, 15 April 2019
  • ===David and Kimberly to NYC=== * David and Kimberly visited Peter last Thursday and Friday to discuss the Reactome ...
    2 KB (369 words) - 06:33, 4 March 2019
  • Chris, Melanie, Heiko, Paul T, David OS Minutes: David OS ...
    2 KB (378 words) - 17:59, 18 June 2015
  • **MF-MF and MF-BP regulates links live in gene_ontology_ext.obo (Chris, David, Tanya, Jane) ...ternal_Cross_Products]] and [[Editors_cross-product_implementation_plan]] (David, Midori, Jane, Jen, Chris, Tanya) ...
    4 KB (470 words) - 07:11, 2 April 2009
  • ...members:''' Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris, Paul ...
    369 bytes (47 words) - 23:25, 27 November 2021
  • Participants: Pascale, Midori, Jen, David ...avid, Chris''': organize the xp webex. (There has been a great tutorial by David OS at the Buffalo Ontology meeting) ...
    2 KB (253 words) - 12:29, 30 June 2014
  • Present: David, Rama, Kimberly, Pascale, Jane, Paul S, Judy ...
    268 bytes (41 words) - 15:11, 27 June 2014
  • |David Hill |david.hill-at-jax.org ...
    2 KB (197 words) - 11:40, 9 January 2023
  • Present: Judy, David, Rama, Emily, Paul, Suzi, MikeC ...
    294 bytes (42 words) - 15:29, 27 June 2014
  • David, Jane, Jen, Midori, Tanya; occasional contributions from other C. Collaboration with Jonathan Liu, MIT: David has pointed Jonathan ...
    4 KB (521 words) - 06:50, 2 April 2009
  • * Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris (few mins late), Cynthi ...
    497 bytes (68 words) - 10:56, 7 September 2022
  • ...members:''' Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris, Paul ...esent:''' Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris, Paul ...
    1 KB (155 words) - 06:13, 26 April 2022
  • **Resolving disjointness violations in the process ontology (Jane and David; almost finished) **Planning for cardio content meeting (David, Simon, experts; see above) ...
    4 KB (517 words) - 06:48, 2 April 2009
  • ...rkshop|heart development content meeting]] held at UCL September 22, 2009 (David, Varsha, Doug, et al.) ...bi|ChEBI cross-products]]; conference call organized (Midori, Chris, Jane, David, ChEBI curators) ...
    3 KB (420 words) - 09:23, 1 December 2009
  • * Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia * Present: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia ...
    1 KB (190 words) - 13:29, 17 November 2022
  • * David, Pascale and Kimberly will discuss possible dates and make a doodle poll. Pascale, David and Kimberly have been working on standardizing the ontology documentation ...
    2 KB (242 words) - 12:27, 11 June 2018
  • Complete is_a paths for CNS terms (David Hill, Doug Howe, Cindy development committed. (Jen, David Hill, Doug Howe, Cindy Smith, ...
    3 KB (466 words) - 17:32, 9 April 2014
  • ...members:''' Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris, Paul * '''Present: ''' Harold, Raymond, Karen, David, Tanya, Sierra, Kimberly, Jim, ...
    2 KB (210 words) - 12:27, 23 August 2021
  • Present: Rama, Rachael, David Hill, Ruth, Becky, Paul, Li, Petra, Paola, Aleks, Kimberly, Edith, Doug, Sa === Ub/Ub-like functions (David H)=== ...
    3 KB (504 words) - 09:48, 15 April 2019
  • ...rkshop|heart development content meeting]] held at UCL September 22, 2009 (David, Varsha, Doug, et al.) ***Work on branching organ development (David) ...
    3 KB (389 words) - 10:26, 30 November 2009
  • Pascale Gaudet, David Hill, Tanya Berardini, Jennifer Deegan. ...
    222 bytes (32 words) - 10:20, 9 February 2023
  • ...Pascale, Harold, Raymond, Val, Edith, Peter, Jim, Tanya, Karen, Kimberly, David, Chris, Paul ...Present:''' Pascale, Harold, Raymond, Val, Edith, Jim, Tanya, Kimberly, David, Chris, Peter, Paul ...
    966 bytes (130 words) - 11:01, 16 February 2023
  • Minutes: David<br> Present: David, Pascale, Midori, Jen<br> ...
    2 KB (338 words) - 12:49, 30 June 2014
  • *Models from David, Kimberly, Paul *Further review on another call (David H is out today) ...
    956 bytes (143 words) - 12:29, 2 November 2015
  • * Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris ...
    500 bytes (64 words) - 10:26, 30 September 2021
  • **Disjointness violations in process ontology resolved (Jane and David) **Cardio content meeting (David, Simon, experts; see above) ...
    3 KB (461 words) - 06:48, 2 April 2009
  • 1427800 - David, Doug 1745015 - David ...
    4 KB (507 words) - 07:05, 2 April 2009
  • * Present: David, Kimberly, Pascale, Seth, Suzi, Paul, Chris + Peter, Dustin * Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Judy, Paul, Chris ...
    2 KB (349 words) - 12:03, 17 March 2021
  • Jane & David - "uncommitted text edits" problem worse than ever (David has updated existing bug report). Amina will fix soon (connected with text ...details in bug report. Amina will try to replicate; gets suggestions from David for what to try. ...
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  • *On call: David H, Judy, Kimberly, Moni, Paul T., Suzi === David H === ...
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  • *On call: Chris, David H., Eric, Harold, Karen, Kimberly, Pascale, Paul T., Tanya *Reasoning over roles - should David present the ticket and the issues at the meeting? ...
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  • Present: Pascale, David, Judy, Emily, Paul S, Rama, Mike C, Chris * Agenda: David ...
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  • |Harold, David, Tanya, Jane, Chris, Becky, Paola |Amelia, Chris, David, Jane, Tanya, Becky, Paola ...
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  • **Synaptic transmission terms (David) David & Midori have set priorities for some tasks (several remain to be prioritiz ...
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  • ** Mike happy with David's proposal. ...ll send comments on CVs. Need to prepare questions for interviews. Chris & David will teleconference in to interviews. ...
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  • **David and Tanya (and other curators, as need arises) are sorting out the regulati 1803319 David ...
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  • *On call: Bob, Chris, David, Dmitry, Dustin, Edith, Elena, Giulia, Harold, Helen, Kimberly, Laurent-Phi ...
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  • David has received comments. He doesn't have a version ready for more comments. H ...
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  • * Present: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris * Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris ...
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  • Agenda/chair: David<br> '''Action Item''': David will send regulation relationship slides round.<b> Tanya has linked these t ...
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  • *Paper review (David, are you still interested in doing this?) ...
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  • * Here are the links to the models built by David, Kimberly and Rama David- http://go-genkisugi.rhcloud.com/seed/model/gomodel:taxon_559292-5525a0fc00 ...
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  • *EBI: David OS *MGI: David H ...
    2 KB (362 words) - 17:38, 9 March 2016
  • ...sensory perception term. Based on Daniele's analysis, this is misleading. David will have to review the MGI annotation and get in touch with Emily and RGD David and Tanya will schedule a second meeting with Elissa Chesler to discuss the ...
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  • ** has_primary_input/output report---David ** Spatial relations plan--- David or Kimberly ...
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  • **'Regulates' relationships live (yay!) (David, Tanya, Chris, et al.) **Follow-up to 'regulates' work -- David and Tanya are still correcting errors reported by Chris' QC scripts; error ...
    3 KB (411 words) - 07:08, 2 April 2009
  • Cardiac muscle terms, round 1 (Jen, with Doug, David Hill, David GO Eds and David Hill met in Hinxton Oct. 2-3. Since the meeting, ...
    4 KB (607 words) - 10:36, 1 July 2014
  • * Present: David, Kimberly, Pascale, Seth, Suzi, Paul + Tanya * Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris ...
    2 KB (303 words) - 14:51, 30 June 2021
  • ...:''' Melanie Courtot, Paola Roncaglia, Kimberly Van Auken, Pascale Gaudet, David Hill, Huaiyu Mi, and Moni Munoz-Torres. '''Agenda:''' David Hill ...
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  • * Members: David, Jim, Kimberly, Pascale, Seth, Suzi, Huaiyu, Paul, Chris, Cynthia * Present: David, Jim, Kimberly, Pascale, Seth, Suzi, Huaiyu, Paul, Chris, Cynthia ...
    4 KB (628 words) - 13:27, 27 September 2023
  • | David Osumi-Sutherland | Harold Drabkin, David Hill ...
    3 KB (416 words) - 01:31, 1 February 2017
  • ...regenerated a lot of import files with ontobot, seems to be working great, David will start to assign specific people to different external ontologies. THin ...
    1 KB (200 words) - 11:17, 15 July 2019
  • * Present: Chris, David, Huaiyu, Judy, Paul, Seth, Suzi * Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Judy, Paul, Chris ...
    930 bytes (139 words) - 11:54, 14 April 2021
  • ...rom Reactome. More details in 28 March managers' call minutes (report from David). **Regulation of process terms - check for consistency with process terms (David, using file from Chris) ...
    6 KB (887 words) - 06:53, 2 April 2009
  • * Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia * Regrets: David, Kimberly ...
    2 KB (293 words) - 08:10, 20 January 2023
  • ...Pascale, Harold, Raymond, Val, Edith, Peter, Jim, Tanya, Karen, Kimberly, David, Chris, Paul * '''Regrets: ''' David ...
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  • Attendees: Paola, Melanie, David H, Heiko, Harold, Tanya, Paul T, Chris At the moment, some editors (e.g. David H) are still using the 'old' strategy and merging terms in OBO-Edit. ...
    1 KB (189 words) - 11:35, 27 August 2015
  • * Present: Chris, David, Huaiyu, Kimberly, Paul, Seth, Suzi * Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris ...
    3 KB (451 words) - 11:34, 21 July 2021
  • ****Work on branching organ development (David) ***Regulation - also see above (David, Tanya) ...
    4 KB (497 words) - 09:57, 3 August 2009
  • ...avid, Chris''': organize the xp webex. (There has been a great tutorial by David OS at the Buffalo Ontology meeting) ...
    1 KB (215 words) - 12:49, 30 June 2014
  • * Present: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris * Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Judy, Paul, Chris ...
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  • ATTENDEES: Paola, Chris, David, Harold, Heiko, Tanya, Jane <font color="purple">David summarizes the two proposals that were made at the meeting. ...
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  • * Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Judy, Paul, Chris * David, Kimberly, Laurent-Philippe will design testing scenarios to be tested by c ...
    1 KB (161 words) - 11:24, 21 April 2021
  • ...members:''' Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris, Paul ...Present: ''' Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris ...
    1 KB (176 words) - 07:54, 26 October 2021
  • ...Pascale, Harold, Raymond, Val, Edith, Peter, Jim, Tanya, Karen, Kimberly, David, Chris, Paul ...:''' Pascale, Harold, Raymond, Val, Edith, Jim, Tanya, Karen, Kimberly, David, Chris, ...
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  • ** Note that only half of the current ontology editors are attending (David, Kimberly, Pascale). **Responses from: David H, Kimberly, Moni, Pascale, Seth, Suzi ...
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  • David Hill, Tanya Berardini, Chris Mungall '''David and Tanya:''' examine resulting data and update ontology accordingly ...
    3 KB (487 words) - 10:21, 9 February 2023
  • ===Extracellular branch of GO CC (David OS)=== ...
    2 KB (298 words) - 09:49, 15 April 2019
  • *Pathways2GO (David, Kimberly, Ben, Huaiyu, Jim- GO funded; PeterD- not GO funded) ** David and Kimberly to visit Peter D?? (others?) ...
    1 KB (195 words) - 10:33, 9 April 2019
  • ...o_ext) file soon. The first ones to go in will be the 'regulates' xps that David & Tanya are working with. ***Work on branching organ development (David) ...
    3 KB (484 words) - 07:14, 10 September 2009
  • ...regenerated a lot of import files with ontobot, seems to be working great, David will start to assign specific people to different external ontologies. ...
    1 KB (200 words) - 12:31, 8 July 2019
  • * Minutes: David Pascale, Chris, Seth, Huaiyu, Kimberly, David, Laurent-Philippe, Paul, Seth, Suzi ...
    2 KB (254 words) - 13:00, 8 May 2019
  • * Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia | Need to complete documentation (Pascale + Kimberly, David, Paul, Patrick proof read) ...
    5 KB (739 words) - 08:17, 21 September 2022
  • * Present: Pascale, Seth, Suzi, Kimberly, Paul, David, Cindy, * Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris ...
    1 KB (162 words) - 12:03, 17 November 2021
  • * Agenda: David * Present: David, Huaiyu, Judy, Kimberly, Laurent-Philippe, Pascale, Paul, Seth, Suzi ...
    2 KB (312 words) - 12:29, 22 January 2020
  • ...conference call/meeting involving at least some of us and ChEBI is needed) David OS will meet with Janna and Gareth around March 10th - could use the occasi ...
    497 bytes (76 words) - 09:32, 25 February 2015
  • * Members: David, Jim, Kimberly, Pascale, Seth, Suzi, Huaiyu, Paul, Chris, Cynthia ** PO: David and Kimberly ...
    4 KB (613 words) - 03:25, 9 October 2023
  • * Present: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Judy, Paul, Chris * Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Judy, Paul, Chris ...
    3 KB (488 words) - 13:31, 24 February 2021
  • * Present: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia * Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia ...
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  • August 1 (Jen, David Hill) 1521229 - content by David Hill, edits done by Harold Drabkin ...
    3 KB (397 words) - 11:43, 20 August 2009
  • David Hill dph at informatics.jax.org<br> ...
    492 bytes (78 words) - 09:29, 12 April 2019
  • ...nt|kidney]], salivary gland, mammary gland, prostate, and possibly others (David) ***Regulation - also see above (David, Tanya) ...
    3 KB (394 words) - 05:24, 1 July 2009
  • **Regulation of process terms - check for consistency with process terms (David, using file from Chris) David & Midori have looked over the outstanding SourceForge items, and are ready ...
    5 KB (722 words) - 06:52, 2 April 2009
  • ...ers:''' Pascale, Raymond, Edith, Val, Steven, Jim, Tanya, Kimberly, Peter, David, Chris, Paul * '''Present:''' Peter, Chris, Val, Pascale, Edith, Raymond, Jim, Kimberly, David, ...
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  • David: can we use the tutorial video<br> David: I would like to put together something more compact and quick introduction ...
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  • *'''Present''': Rama, Pascale, David, Paul S., Kimberly, Rachael, Chris, Huaiyu, Jane, Suzi David - using it as only browser; it's been working very well. Have contacted Se ...
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  • Present: Rama, Chris, David, Jane, Kimberley, Pascale, Suzi ...id Hill can go for a day, he will look into going for both days (Dec 4,5). David OS has offered to go. Suzi mentioned that there are funds to fund this trip ...
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  • === MGI - David and Karen === *On call: Barbara, David H., David OS, Edith, George, Giulia, Harold, Helen, Karen, Li, Midori, Moni, Paola, P ...
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  • * '''Group members:''' Pascale, Raymond, Edith, Jim, Tanya, Kimberly, Peter, David, Chris, Paul ...
    508 bytes (67 words) - 03:03, 26 September 2023
  • * Agenda: David * Present: Seth, David, Pascale, Suzi, Huaiyu, Paul D., Judy, Chris ...
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  • * '''Group members:''' Pascale, Karen, Harold, Raymond, Peter, Jim, Kimberly, David, Chris, Paul ...
    539 bytes (75 words) - 12:22, 30 July 2021
  • Attendees: Amina, Harold, Jen, Karen C, Chris, Midori, David OS :David will send Amina some specific searches, etc. to help debug ...
    2 KB (401 words) - 16:40, 30 June 2014
  • Pascale, David and Kimberly have been working on standardizing the ontology documentation * David, Pascale and Kimberly will discuss possible dates and make a doodle poll. ...
    2 KB (358 words) - 12:16, 18 June 2018
  • Erich, David, Kimberly and Pascale loaded Docker and tried to regenerate the cell ontolo David- Protege 5.1.0, OBO annotation plugin 0.4.0<br> ...
    5 KB (814 words) - 12:54, 2 July 2018
  • ...i and Jane) have worked through the first set of "too specific" terms, and David has written up a summary of the discussion and changes we've made. Meanwhil **Regulation of process terms - check for consistency with process terms (David, using file from Chris) ...
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  • process work (mainly David, Jane, Jen, Midori, Tanya; occasionally 5. Synaptic transmission (David) ...
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  • ATTENDEES: Becky, Paola, Heiko, Harold, Brenley, Tanya, David, Jane, Chris, Judy Heiko has done a pass. Chris has started another pass. David also to go through and add comments. Jane is keeping track of all this in J ...
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  • * Agenda: David * Present: Chris, David, Huaiyu, Judy, Kimberly, Laurent-Phillipe, Pascale, Paul, Seth, Suzi ...
    1 KB (206 words) - 11:32, 24 June 2020
  • Attendees: Paola, David, Harold, Tanya, Heiko, Chris, Judy AI: Punt this to 2 weeks from now when David OS is here. In the meantime, Paola will add Marc's terms by hand (cloning s ...
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  • * Present: Huaiyu, Kimberly, Pascale, Seth, David, Chris, Paul * Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris ...
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  • Agenda/chair: David<br> Minutes: David<br> ...
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  • Pascale, Karen, Harold, Peter, David, Tanya, Kimberly, Jim, Chris, Pascale, Karen, Harold, Peter, Jim, Tanya, Kimberly, David, Chris, Paul ...
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  • MINUTES: David ...
    81 bytes (9 words) - 15:30, 1 July 2014
  • ...oup members:''' Pascale, Raymond, Val, Edith, Jim, Tanya, Kimberly, Peter, David, Chris, Paul * '''Present:''' Pascale, Raymond, Val, Edith, Jim, Kimberly, Peter, David, Chris, Paul ...
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  • '''Present''': Chris, David H., Judy, Kimberly, Melanie, Moni, Pascale, Suzi, Chris *Chris, David OS, and Tony talked about consistent inferences between Protein2GO and GOC ...
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  • * Present: Chris, David, Huaiyu, Judy, Paul, Seth, Suzi * Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Judy, Paul, Chris ...
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  • * Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia * Present: David, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia ...
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  • Attendees: Becky, David, Heiko, Tanya, Harold, Judy Minutes: David ...
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  • Participants: Pascale, Midori, Chris, Suzi, Mike, David, Jen, Jane *'''David, Tanya, Jane:''' Compose wiki documentation for ontology editors, with step ...
    3 KB (529 words) - 12:31, 30 June 2014
  • ...n-standard' annotation? And if not in GO, where else does it live? [Jane & David] ...
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  • - What do we gain by using xps? (Midori & David?) - What GO terms and other ontologies will be used in xps? (Midori, David, ...
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  • * David's poster posted to the wiki: ** Midori and Harold can't see log files for new version OE2. David checked this - his not being updated either. ...
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  • David H and David OS, could you please update cards assigned to you: https://trello.com/b/Idt ...
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  • *On call: Chris, David H., David O-S., Giulia, Heiko, Kimberly, Paul T., Ruth, Seth, Suzi *AI: David and Kimberly will work on Chris' mock-up and present at next meeting ...
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  • * Present: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris * Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris ...
    3 KB (502 words) - 11:56, 28 July 2021
  • * Present: David, Kimberly, Pascale, Seth, Suzi, Paul, Chris * Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris ...
    2 KB (370 words) - 11:32, 8 September 2021
  • ...ers:''' Pascale, Harold, Raymond, Val, Peter, Jim, Tanya, Karen, Kimberly, David, Chris, Paul * '''Present:''' Pascale, Harold, Raymond, Val, Jim, Karen, Kimberly, David, Paul ...
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  • * On call: Birgit, Bob, Colin, David, Edith, Giulia, Harold, Helen, Karen, Kimberly, Laurent-Philippe, Li, Midor ...
    666 bytes (93 words) - 11:04, 5 May 2020
  • I have received feedback from David Hill at MGI and from Val Wood at The Pombe database. They have reviewed the ==At MGI (David Hill):== ...
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  • Submission of annotations by PseudoCAP (with David Hill, Emily Dimmer) 1416285 - David Hill, Doug Howe ...
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  • Present: Rama, Judy, David, Jane, Tanya, Pascale, Suzi, Moni, Chris, DavidOS, Prudence, Susan, Paola, * Ruth and David OS will model the new relationship in LEGO ...
    2 KB (283 words) - 09:46, 15 April 2019
  • * '''Group members:''' Pascale, Raymond, Edith, Jim, Tanya, Kimberly, Peter, David, Chris, Paul * '''Present:''' Chris, Edith, Raymond, Jim, Tanya, Peter, Paul, David, Kimberly, ...
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  • *** David - I'm still seeing this occassionally ** David ...
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  • Amina: David how much memory did you allocate to the application?<br> David: over 1024Mb <br> ...
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  • Attendees:Harold, Paola, David H, David OS, Heiko, Tanya, Harold Minutes:David ...
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  • ...members:''' Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris, Paul, Eric * '''Present: Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris, Paul, ''' ...
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  • Present: Pascale, Rama, Judy, Paul S, David, Kara, Suzi, Paul T, Emily ...re general. We will refer to the document that was sent around last week. (David) ...
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  • **David and Tanya are almost finished with Chris' file of "regulation of non-proces 1815288 Tanya, David ...
    3 KB (427 words) - 07:06, 2 April 2009
  • * Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia * Present: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris ...
    3 KB (429 words) - 13:22, 11 January 2023
  • ...ld have received a login. Have formed an ad-hoc WG which consists of Jane, David, Emily and Tanya. Anyone else want to join? David has sent a note to the GOC. We will see what people like and see if there i ...
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  • *Proposed aims (David, Kimberly, Pascale): *Begin with weekly virtual meeting to examine specific pathways (Ben, David, Kimberly, Peter, Huaiyu, Chris, PaulT) ...
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  • ATTENDEES: Paola, Jane, David, Tanya, Judy, Heiko, Chris, Harold AI: David will send pre-submission enquiry by the end of next week. ...
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  • *On call: Ben, Chris, David H., Edith, Eric, Harold, Jim, Karen, Kevin, Kimberly, Li, Paul T., Rob, Sab ...
    455 bytes (66 words) - 05:45, 16 April 2019
  • MGI: Judy, David, Karen, Li<br> ===Symbiotic relationships (David OS)=== ...
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  • * Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia * Present: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul ...
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  • * Present: David, Huaiyu, Kimberly, Pascale, Seth, Suzi * Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris ...
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  • David: Examples in Protege are modeling examples, not annotation. David: How would this tool fit in with the Common Annotation Tool? ...
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  • ** has_primary_input/output report---David ** Spatial relations plan--- David or Kimberly ...
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  • * David and Tanya, could you please update us on the ChEBI work? Thanks. ...and Jane to have separate phone call to discuss agenda, including whether David OS or anyone else will give demo and then 'problems' to work through as a g ...
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  • How's it looking after Chris' meeting with Tanya and David? Tanya reporting: a few sections were moved around to sound less methody; David will add a bit more, and ...
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  • Attendees: Paola, Becky, David, Tanya, Harold, Chris, Heiko AI: We'll check with Jane about possible dates and if we need to bring David or other people in, and if so where is the funding coming from. ...
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  • * On call: David, Dmitry, Dustin, Edith, Giulia, Harold, Judy, Karen, Kimberly, Laurent-Phil ...
    597 bytes (77 words) - 11:55, 23 March 2020
  • *On call: Chris, David H., Eric, Jim, Karen, Kimberly, Pascale, Tanya **MAPK - David H. ...
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  • * David Hill ** Tanya and David: enzyme regulator activity, structural molecule activity, transporter activ ...
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  • * Present: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, * Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris ...
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  • * Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia *** David to provide list of MGI checks ...
    3 KB (435 words) - 11:15, 22 June 2022
  • ...biology_Project]] content meeting report - outline of new terms added - '''David''' ...
    677 bytes (84 words) - 10:08, 12 April 2019
  • * David OS will be attending a OWL workshop in October at XX? ===Ontology (David/Jane)=== ...
    3 KB (487 words) - 09:51, 15 April 2019
  • *David Hill * David: Recalls from the meeting that the feedback loop IS integral to the transit ...
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  • ** David OS agrees that it's better to avoid 'import/export instead of transmembrane Pascale, Chris, Eric, Harold, Jim, Karen, Moni, Suzi, Paul, David OS, Tanya ...
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  • * Present: David, Kimberly, Huaiyu, Suzi, Laurent, Judy, Chris, Pascale, PaulT, Suzi, Seth David: PRO is used by Reactome and MGI<br /> ...
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  • Attendees: Amina, David, Karen, Midori, Jennifer, Jane, (Chris after 5.15pm). David: Some relationships are used for grouping annotations, but has_part is not ...
    7 KB (1,213 words) - 16:57, 30 June 2014
  • ...could be performed in a similar way to OE, but are currently very limited. David OS suggests trying out the annotation plugin that’s been around for some AI: David OS will look further into this to determine if we can realistically use P5 ...
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  • * Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia * David 67% ...
    7 KB (881 words) - 11:05, 26 October 2022
  • Minutes: David H (David OS, do we need to?) ...
    2 KB (296 words) - 13:00, 30 June 2016
  • Where are we with the planned action items? David OS made a start on this. Transitive? The latest AI was for David OS to put together a proposal for this, and run it by Tony. ...
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  • * Minutes: David * Present: David, Pascale, Paul T, Kimberly, Seth, Suzi, Huaiyu, Chris, Laurent-Philippe ...
    2 KB (313 words) - 12:39, 15 January 2020
  • * Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Judy, Paul, Chris ** David manually testing files that MGI ingest from all resources (e.g. GOC, UniPro ...
    3 KB (454 words) - 12:58, 3 March 2021
  • ...oup members:''' Pascale, Raymond, Val, Edith, Jim, Tanya, Kimberly, Peter, David, Chris, Paul * '''Present:''' Pascale, Raymond, Val, Edith, Jim, Tanya, Kimberly, Peter, David, Chris, ...
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  • ...Francisco in July 2009. In a follow-up to a preliminary experiment where David attended the Molecular Reproduction & Development meeting in the April wher ...
    2 KB (330 words) - 14:02, 14 July 2014
  • ...oup members:''' Pascale, Raymond, Edith, Val, Jim, Tanya, Kimberly, Peter, David, Chris, Paul * '''Present:''' Pascale, Raymond, Edith, Val, Jim, Peter, David, Chris, Paul ...
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  • David to submit pre-submission letter. Need to restrict permissions : email David or Jane for nomination of people from each group. ...
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  • * Present: David, Huaiyu, Kimberly, Pascale, Seth, Chris, Suzi * Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris ...
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  • David and Tanya will report on the GO-CHEBI alignment project. ...
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  • ***Work on branching organ development (David) ***Regulation - also see above (David, Tanya) ...
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  • * Present: Chris, David, Huaiyu, Laurent-Philippe, Kimberly, Pascale, Seth, Suzi, Judy, Paul * Managers: Chris, David, Huaiyu, Laurent-Philippe, Kimberly, Pascale, Seth, Suzi, Judy, Paul ...
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  • Attendees:Paola, David H, David OS, Harold, Heiko, Tanya, Jane, Chris, Becky Minutes: David H ...
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  • * Minutes: David * Present: David, Paul T, Seth, Laurent-Philippe, Kimberly, Pascale, Chris, Huaiyu, Harold ...
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  • * Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Judy, Paul, Chris ...
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  • * Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia ...
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  • *Attending: David, Huaiyu, Judy, Moni, Paul ** '''Chris and David''' will work on enrichment analysis with and without IMPs included. ...
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  • present:David Hill, Mike Cherry, Michael Ashburner, Suzi Lewis, Eurie Hong, Jen Clark, Ja * Midori & Alex: Adding references for content meetings. Also, David to do references for CNS meeting [CNS done, Still working on Immunology] ...
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  • David has started an agenda document in the GOOGLE Drive. ** David H (Can make it) ...
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  • ** David: it would be good to have concrete goals for the end of the year. e.g. all * Who will participate David H, Kimberly, David OS, Moni, Chris, Pascale, Karen, Huaiyu, Barbara, Paul T, .... ...
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  • * Agenda: David * Present: David, Chris, Judy, Pascale, Huaiyu, Seth, Paul, Chris, Laurent-Philippe, Suzi, K ...
    3 KB (416 words) - 11:51, 30 October 2019
  • Participants: Judy, Jen, Midori, David, Chris, Pascale, Jane Minutes: David ...
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  • *David will modify the wiki that describes the GPI specs. *On call: Barbara, Chris, David H., David OS, Jim, Kimberly, Midori, Sabrina, Seth, Stacia ...
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  • * Present: Chris, David, Huaiyu, Judy, Kimberly, Paul, Seth, Suzi * Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Judy, Paul, Chris ...
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  • * David initiated a discussion about pull requests in ontology github from someone **David argued that only the trained ontology developers should be allowed to make ...
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  • * Present: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia, Mike * Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia ...
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  • * Pathway2GO (David) Pascale, Judith, Suzi, Laurent-Philippe, David, Paul ...
    2 KB (258 words) - 13:03, 29 July 2019
  • * Present: Eurie, Suzi, Chris, Mike, Midori, Michael, Judy, David, Jen ===a. David and Midori will have a proposal for documentation process and identifying m ...
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  • Ontology Content – Midori and David David discusses is_a complete in biological process ...
    3 KB (424 words) - 12:10, 9 February 2023
  • *Cardiovascular physiology: David has finished meeting follow-up work; file available at go/scratch/gene_onto **David is working through Chris' file of "regulation of non-process" anomalies; in ...
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  • Minutes: David Attendees: David, Harold, Paola, Becky, Chris, Heiko, Tanya ...
    6 KB (979 words) - 10:09, 4 June 2013
  • Attendees: Paola, Tanya, Harold, Chris, David OS, Melanie, Heiko, Paul ...g github.''' Somewhat related (though not “MF refactoring" stricto sensu): David has already done a round of TF renaming, will do 2nd round. Need patterns f ...
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  • * Karen or David to give a summary/Webex on the transcription ontology changes ...
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  • ...members:''' Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris, Paul * This lead to some discussion on email among David, Kimberly, Peter and I about the standard definition of 'metabolic process' ...
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  • * Agenda: David ** David will figure out a way to get the MGI Curator's report to go to the entire G ...
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  • Attendees: Melanie, Paola, Chris, David H, Harold, Jim, Monica, Tanya Regrets: David OS ...
    5 KB (843 words) - 13:14, 6 October 2016
  • Minutes: David *'''David, Tanya, Jane:''' Compose wiki documentation for ontology editors, with step ...
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  • David: it is the same with me. When the display gets too big is craps out. Eventu David: you can check whether it shows all paths to the root, and if you have the ...
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  • Attendees: David H, David OS, Paul T, Paola, Harold, Heiko, Chris, Tanya, Jane Minutes:David H ...
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  • * Present: David, Huaiyu, Judy, Paul, Pascale, Seth, Laurent-Philippe, Chris * Managers: Chris, David, Huaiyu, Laurent-Philippe, Kimberly, Pascale, Seth, Suzi, Judy, Paul ...
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  • Maybe we need to invoke David's regulation rules and decide where the ...
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  • David has checked the file and has noted the strange ones in the ticket. Present: David H, Harold, Karen, Pascale, David OS, Chris M, Moni, Eric, Jim, Paul T, Tanya ...
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  • * Present: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris * Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris ...
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  • EBI: David OS, Melanie MGI: David H., Li ...
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  • ** has_primary_input/output report---David ** reactome import into GO-CAM--- David, Peter ...
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  • *David: Is the project still funded? ====Ontology update (David)==== ...
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  • Attendees: Paola, David OS, David H, Harold, Tanya, Chris David OS met with ChEBI curator Gareth today. Summary: ...
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  • * Present: David, Pascale, David, Suzi, Seth, Huaiyu, Paul, Kimberly, * Managers: Chris, David, Huaiyu, Laurent-Philippe, Kimberly, Pascale, Seth, Suzi, Judy, Paul ...
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  • Attendees: Becky, Paola, Heiko, David, Tanya, Chris, Jane <pre>TO DO: David will tease out which of our terms belong in which category and complete GO- ...
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  • * Members: David, Jim, Kimberly, Pascale, Seth, Suzi, Huaiyu, Paul, Chris, Cynthia ...
    1 KB (150 words) - 09:57, 1 November 2023
  • **MF-MF and MF-BP regulates links live in gene_ontology_ext.obo (Chris, David, Tanya, Jane) ...ternal_Cross_Products]] and [[Editors_cross-product_implementation_plan]] (David, Midori, Jane, Jen, Chris, Tanya) ...
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  • Attendees: Paola, Heiko, Jane, David OS, David H, Harold, Chris, Judy Open a JIRA item to report this (David OS). For the moment we are nor not asserting any inferences. Should we turn ...
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  • David H: each coding MGI has a UniProt ID in the dbxref column. Would be easy to '''AI: David H to add this in the documentation for the GPI''': Any gene coding should h ...
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  • *On call: Chris, Huaiyu, Paola, Rama, Kimberly, Judy, David, Paul T., Pascale **David: ...
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  • ...members:''' Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris, Paul * '''Present:''' Pascale, Raymond, Harold, David, Peter, Karen, Kimberly, Chris, Jim ...
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  • *On call: Pascale, Kimberley, Chris, Huaiyu, Paul D., Judy, Suzi, David H. *David: Probably should be done sooner ...
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  • *On call: Chris, David H., Eric, Harold, Jim, Kimberly, Pascale, Paul T., Tanya **MAPK- David ...
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  • MINUTES: David ATTENDEES:David, Tanya, Jane, Paola, Heiko, Harold, Chris ...
    4 KB (598 words) - 15:31, 1 July 2014
  • ...members:''' Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris, Paul * '''Present:''' Pascale, Karen, Harold, Raymond, Peter, Jim, David, Chris, ...
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  • Participants: David, Pascale, Midori, Kara, Jane, Chris, Suzi Agenda: David ...
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  • After contacting editorial board, David Eisenberg (UCLA) got their commitment to add, as an Editorial board contacted by David Eisenberg (UCLA) commited to add, an additional file ...
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  • David, Peter, Harold, Jim, Karen, Tanya, Kimberly, Chris Pascale, Karen, Harold, Peter, Jim, Tanya, Kimberly, David, Chris, Paul ...
    2 KB (296 words) - 13:05, 2 November 2020
  • *On call: David H, Huaiyu, Judy, Kimberly, Pascale, Paul T. *David H will ask editors to keep track of complexes, binding, Noctuable, i.e. com ...
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  • On call:Eric, Jim, Bill, Karen, David, Kimberly, Harold, Peter, PaulT, Pascale *Chris, David, Karen - form a working group? ...
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  • Pascale, Karen, Harold, Peter, Jim, Tanya, Kimberly, David, Chris, Paul ...
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  • Attendees: Amina, Midori, Harold, Jen, Jane, David ## David - follow-up question about root detection; some terms with part_of but no i ...
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  • ...members:''' Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris, Paul * '''Present:''' Pascale, Karen, Harold, Raymond, Peter, Kimberly, David, ...
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  • Present: Jen, David, Judy, Pascale, Mike, Michael * Tanya and David are still working on 'regulates'; 2/3 done ...
    5 KB (738 words) - 13:01, 30 June 2014
  • ...Pascale, Harold, Raymond, Val, Edith, Peter, Jim, Tanya, Karen, Kimberly, David, Chris, Paul * '''Regrets: ''' David ...
    4 KB (518 words) - 11:59, 7 December 2022
  • ...Judy Blake, Mike Cherry, Eurie Hong, Suzi Lewis, Rex Chisholm, Jen Deegan, David Hill, ???....<br> '''Chris and David:''' Get GO and Cell Ontology cross-products in place. ...
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  • MGI: Judy, David Hill, Li<br> David: Author performs invitro assay where he purifies enzyme, measures activity, ...
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  • * Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia ...uss and create roadmap for integrating remaining resource upstream files] (David) ...
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  • David will be taking time off between Christmas and New Years' but he will contin ...
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  • guided by David Hill, MGI) (ZFIN), Carol Bastiani, Erich Schwarz (WB), David Hill (MGI) ...
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  • ** has_primary_input/output report---David ** reactome import into GO-CAM--- David, Peter ...
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  • This month we had Tanya and David join us to discuss future database Chris met with Tanya and David at Carnegie. Chris extended the ...
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  • Pascale, David, Chris, Jen, Midori * David: submitting GO for review to become an OBO-foundry ontology. This is the ou ...
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  • Agenda/chair: Pascale, Jane, Judy, David, Suzi ...ment meeting in London the day before the Sept GOC meetings. Ruth, Varsha, David, Doug and community experts will attend. ...
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  • *David Hill **Overlap between David Hill’s and Midori’s Groups ...
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  • Agenda/chair: David<br> Present: Jennifer, Judy, Midori, David, Pascale, Michael, Jane, Chris ...
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  • **David has gone through Chris' file of "regulation of non-process" anomalies; in s 1779479 David ...
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  • Present: Midori, Jen, Jane, Pascale, David, Chris, Judy **Book chapter on ontology development, GO-style: David, Judy, Tanya, Chris ...
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  • *On call: Chris, David OS, Giulia, Heiko, Helen, Kimberly, Pascale, Ruth, Seth, Stacia, Suzi **David H, Heiko, Kimberly working on this ...
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  • Kimberly, David, Pascale: Proposal for 2018/early 2019 priorities: * '''Noctua+GO-CAM repository''': Kimberly/Seth/David: ...
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  • * Present: Chris, David, Huaiyu, Kimberly, Laurent-Philippe, Pascale, Seth, Suzi ...
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  • David has checked the file and has noted the strange ones in the ticket. *On call: Darren, David OS, Eric, Harold, Karen, Kimberly, Moni, Pascale, Suzi, Tanya ...
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  • Attendees: Chris, Heiko, Tanya, Dvid OS, David H, Melanie Chris, Heiko and David OS to report. ...
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  • AI: for David OS: Need to edit structure by role file to accommodate this. Whoever owns t AI: David OS - policy is that embryo organ development is the development of embryo-s ...
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  • Attendees: Becky, Paola, David H, David OS, Harold, Heiko, Tanya, Jane, Chris David H I know I've pestered you about this isa overloading in development before ...
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  • * Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia * Regrets: David, Cynthia ...
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  • * Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia * Present: David, Kimberly, Pascale, Seth, Paul, Chris, Huaiyu, ...
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  • Attendees: Chris, David H, David OS, Harold, Tanya ...
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  • ...ISS, IC Usage Discussion]]: Tanya Berardini, Emily Dimmer, Pascale Gaudet, David Hill, Chris Mungall, Kimberly VanAuken * [[Annotation consistency: x protein binding and with]] : Becky Foulger, David Hill ...
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  • ...oup members:''' Pascale, Raymond, Val, Edith, Jim, Tanya, Kimberly, Peter, David, Chris, Paul ...
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  • Attendees: Judy, Harold, David, Heiko, Becky, Paola, Tanya, Chris, Jane David/Jane: Hermit gives good explanations, ELK is not great, even though it is f ...
    2 KB (311 words) - 15:49, 1 July 2014
  • ...ould be a relationship between pigment metabolic process and pigmentation (David Hill) ...formal- fully descriptive and not depending on species to define the term (David Hill) ...
    4 KB (585 words) - 10:12, 15 April 2019
  • Attendees: Paola, David OS, David H, Heiko, Tanya, Harold, Paul, Chris, Judy, Jane Paul is reviewing David OS' comments and finding them useful. ...
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  • *Please let David H know if you spot any issues. Chris sent email to GO directors mentioning only David Hill left as editor on March 1st. Plan to train new editors? Maybe AGR edit ...
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  • Attendees: Jane, Paola, David H, David OS, Harold, Heiko, Becky, Tanya, Chris AI: David H and Tanya will check logical defs. for cellular homeostasis terms. If/whe ...
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  • Attendees: Paola, David OS, Tanya, David H, Heiko, Chris As for the export templates, David OS is still working on them. He'll check that he has all the relevant info ...
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  • [David] GPI file currently solves some of this, ties all entries to a GP *[David] manually reviewing annotations to make rules ...
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  • *David OS: Modeling a complex molecular function in Noctua - the NMDA receptor *David OS emailed slides of his LEGO models of complex molecular functions ...
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  • Participants: David, Pascale, Jane, Jennifer, Mike, Midori, Suzi ...avid, Chris''': organize the xp webex. (There has been a great tutorial by David OS at the Buffalo Ontology meeting) ...
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  • ...stors of the term that remain in the vetted file. - '''Meeting booked with David to start''' ...
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  • **''David'': GOC might be a possibility? This is already used for F-P links. **''David'': indicating in the GAF that an annotation came from Noctua may not be nec ...
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  • *On call: David H., Huaiyu, Judith, Kimberly, Pascale, Paul T., Suzi ...
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  • Attendees: Paola, David, Harold, Heiko, Tanya, Jane, Becky ...the idea of 'indirectly_regulates'. We also need to play more with tests. David presented the LEGO example of glycolysis. ...
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  • *On call: Colin, David, Deborah, Dmitry, Dustin, Edith, Harold, Helen, Karen, Kimberly, Li, Pascal ...
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  • * Agenda: David * Present: David, Judy, Kimberly, Pascale, Seth, Suzi ...
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  • *Present: David, Midori, Eurie, Jane, Michael, Mike, Suzi ...eadsheets - terms that are "too specific" and ones that are "too general". David and Midori have had a cursory glance at terms in the spreadsheets. ...
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  • *Present: David, Midori, Eurie, Jane, Michael, Mike, Suzi ...eadsheets - terms that are "too specific" and ones that are "too general". David and Midori have had a cursory glance at terms in the spreadsheets. ...
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  • * Present: Huaiyu, Kimberly, Pascale, Judy, Suzi, David, Chris, Paul * Managers: Chris, David, Huaiyu, Laurent-Philippe, Kimberly, Pascale, Seth, Suzi, Judy, Paul ...
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  • David OS: We should generally defer to the AOs. David H: And where we've agree something in an expert workshop - maybe the ...
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  • 11/18/2008 09:49:48 AM from David OS : That's better!<br> 11/18/2008 09:50:14 AM from David OS : Me too!<br> ...
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  • David questions whether the term should be ...
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  • David MGI; *David H. asked that the physiologists should look at the 'endocrine signaling' te ...
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  • ===David's feedback:=== David gave up including dangling references as it is currently too difficult in O ...
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  • ...ternal_Cross_Products]] and [[Editors_cross-product_implementation_plan]] (David, Midori, Jane, Jen, Chris, Tanya) ***Regulation - also see above (David, Tanya) ...
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  • **David and Kimberly will work on documentation from a curator's POV *Think about finding a new time for LEGO calls when David OS can regularly attend? ...
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  • *David Hill (MGI) * David, Harold pointed out that for biochemical pathways it was hard to find the p ...
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  • 04/29/2008 09:28:46 AM from Jen Deegan: there's david 04/29/2008 09:28:55 AM from Nomi Harris: Yes, thanks for showing up, David! ...
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  • == David OS: MF refactoring, receptors & GOCAM rules - presentation == ...
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  • Emily, Pascale, Rama, Chris, Paul S, Suzi, Judy, David, Paul T ...cription with polII, and also change reverse transcriptase representation. David and Karen meet every Friday. Rama would like to make a deadline to make sur ...
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  • * Present: Judy, Laurent-Philippe, David, Huaiyu, Kimberly, Seth, Suzi, Pascale, Chris, Paul ** Propose a meeting between David, Kimberly, Helen, Penelope, and Alex to discuss UniProt files wrt timing of ...
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  • ...members:''' Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris, Paul, Eric ...
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  • * MAPK - David, Sabrina *On call:Helen, Giulia, Edith, Kevin, Petra, David H, Stan, Midori, Sage, Rob, Tanya, Judy, Karen, Stacia, Shur-Jen, Harold ...
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  • * Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia | '''PI:''' Chris, '''PO:''' Kimberly, '''TL:''' Seth, '''Others:''' David, Suzi, Dustin ...
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  • * Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia * Regrets: David, Cynthia ...
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  • <font color="purple">TO_DO: David has this sorted and will talk to Jane who will walk down the corridoor and *David ...
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  • *** Cross-product / logical definitions update, go/chebi xps (15 - David says longer) *** Evidence codes for MF-BP inferences (5-10 - Chris, David, Rama) ...
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  • *On call: Barbara, Ben, Chris, David, Eric, Harold, Jim, Karen, Kimberly, Laurent-Philippe, Paul T., Tanya *David used Docker to regenerate the ChEBI import with the new reactants ...
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  • '''Minutes:''' David Hill ...
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  • Attendees: Paola, David H, David OS, Harold, Heiko, Judy, Tanya, Jane, Chris Do we want David OS to continue to work on this given staffing constraints? Is AmiGO in shap ...
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  • ATTENDEES: Jane, Paola, Chris, David, Harold, Heiko, Judy, Tanya ...i. References are reformatted properly. No pre-submission, just go for it. David will try to do it before the cell cycle meeting. We can all help write the ...
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  • * Members: Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia, David, Jim * Present: Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia, David, ...
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  • Tanya calculated these metrics covering the work that she, David and Chris did for the implementation of the regulates relationships. This i ...
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  • Attendees: Paola, Chris, Tanya, Harold, Judy, Paul, DavidH, David OS, Melanie * a meiotic term was under the mitotic. David OS suggests to add disjoints, but many more violations in current file. His ...
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  • *[[Non-symbiotic multi-organism processes]] (Jane, David OS) *Autophagy (Paul D, Marc F, David H, Ruth, Paola and community experts) - [https://www.ncbi.nlm.nih.gov/pubme ...
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  • ***David, for your model "RAS signaling template", while it is safe on disk (https:/ *On call: Chris, Dan K., David H., David O-S., Heiko, Kimberly, Pascale, Paul T., Seth, Stacia, Suzi ...
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  • Attendees:David OS, Chris, Tanya, Jane, Paola, Heiko, Harold, David H Minutes: David H ...
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  • David- Protege 5.1.0 <br> Pascale, David and Kimberly have been working on standardizing the ontology documentation ...
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  • * Present: Pascale, Seth, Judy, Chris, Kimberly, David, Huaiyu, Laurent-Philippe, Paul T, *** David: MGI switched to 'causally upstream of or within' - so for a long time this ...
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  • ...hen I closed and opened the file in Protege, I could then see the errors. (David) ...
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  • * Regrets: David * Managers: Chris, David, Huaiyu, Laurent-Philippe, Kimberly, Pascale, Seth, Suzi, Judy, Paul ...
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  • MINUTES: David ATTENDEES:David, Harold, Tanya, Paola, Jane, Heiko, Chris ...
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  • ** David H (Can make it) *On call: Chris, David, Eric, Jim, Karen, Kimberly, Laurent-Philippe, Pascale, Peter, Tanya ...
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  • *On call: Chris (until 9am PST), Dan, David H., David OS, Heiko, Kimberly, Melanie, Sabrina, Stacia, Val *David OS working on importing GO-specific relations into RO ...
    4 KB (589 words) - 14:09, 13 June 2016
  • * Seth mentioned that David H tried to recreate the glycolysis model in noctua and somethings broke. He ...
    756 bytes (135 words) - 15:14, 17 August 2015
  • David Hill ...aces. The regulation cross-products have been released in the extended GO. David and Tanya are now quality checking the internal biological process cross-pr ...
    21 KB (2,353 words) - 15:45, 4 June 2014
  • *** Currently on noctua-dev; has been tested by David, Pascale, Paul, Kimberly, Swiss-Prot curators *On call: Chris, David, Deborah, Dustin, Edith, Giulia, Harold, Helen, Kimberly, Leonore, Malcolm, ...
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  • ...members:''' Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris, Eric ...
    891 bytes (122 words) - 04:39, 8 February 2021
  • * Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia * Regrets: David, Paul, Chris ...
    2 KB (370 words) - 11:43, 29 June 2022
  • (Jane, Jen, David Hill, Tanya Berardini) (David, Jen, Amelia) ...
    5 KB (770 words) - 18:38, 14 July 2014
  • ...e, Paola, Harold, Heiko, Stan (first part of call), Tanya, David H, Chris, David OS Minutes: David OS ...
    3 KB (545 words) - 06:54, 29 April 2016
  • ** David: what if we don't know the isoform for the transcript ** David: 3 different identifiers for genes ...
    5 KB (817 words) - 12:00, 21 October 2015
  • *On call: Barbara, Chris, David H., Eric, Harold, Jim, Judy, Karen, Kimberly, Laurent-Philippe, Pascale, Pa *David H noticing some changes in enrichment analyses ...
    4 KB (625 words) - 13:05, 30 April 2018
  • Minutes: David ...s to work these out with the ChEBI curators. At the 20th meeting Tanya and David will show the EBI curators how they have been working through the list so t ...
    4 KB (655 words) - 15:24, 1 July 2014
  • * Present: David, Kimberly, Pascale, Seth, Chris, Huaiyu, * Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris ...
    5 KB (734 words) - 06:04, 18 June 2021
  • Present: Chris, David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Judy, Paul T, Laurent-Philippe ** David reminds everyone that there should be only one spec instead of multiple wor ...
    2 KB (355 words) - 06:31, 5 March 2019
  • David: redifined blood within blood circulation<br/> David: Merge hemolymph circulation into blood circulation and hemolymph circulat ...
    10 KB (1,503 words) - 03:30, 13 September 2023
  • Attendees: Paola, Heiko, Midori, Tanya, David H, David OS, Jane, Paul T ...ore the end of February; not sure what will happen after end of February. (David H could not do end of Jan - start of Feb, but could do end of Feb on the Ea ...
    8 KB (1,290 words) - 03:47, 15 December 2014
  • David Osumi-Sutherland: "Plans for the extracellular branch of the Cellular Compo David Osumi-Sutherland: "Introduction to OWL" ...
    4 KB (658 words) - 05:47, 13 June 2014
  • Attendees: Paola, Heiko, David H, Harold, Chris, Paul T, Tanya, Jane, David OS David H discussed with Judy. The current way we're doing it is unsustainable, so ...
    5 KB (956 words) - 16:48, 2 October 2014
  • ..., Eric, Laurent-Philippe] (which includes GO-CAM specifications [Kimberly, David, Pascale, Ben, Jim, Huaiyu, Chris, Paul] # Upload standard annotations into Noctua for MGI and Wormbase [Kimberly, David, Ben, Dustin] [depends on #1; can we integrate MF? ] ...
    6 KB (811 words) - 11:24, 28 August 2019
  • |[[Manager Call 2020-01-15 |January 15]]|| Laurent-Philippe || David |[[Manager Call 2020-01-22 |January 22]]|| David || Kimberly ...
    25 KB (3,233 words) - 11:22, 19 April 2024
  • ...Pascale, Harold, Raymond, Val, Edith, Peter, Jim, Tanya, Karen, Kimberly, David, Chris, Paul ...:''' Pascale, Harold, Raymond, Val, Edith, Jim, Tanya, Karen, Kimberly, David, Chris, Peter, Paul ...
    2 KB (352 words) - 09:51, 31 January 2023
  • ...continue WebX contract? Do other meeting facilities meet our needs? (Judy/David) ...
    1 KB (157 words) - 12:17, 27 June 2014
  • *On call: David, Huaiyu, Judy, Kimberly, Moni, Pascale *David tracking new editors time in order to decide how to distribute tickets ...
    4 KB (561 words) - 11:36, 5 April 2017
  • * Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia ...
    1 KB (197 words) - 13:28, 6 December 2022
  • Attendees: Paola, Chris, David, Harold, Heiko, Judy, Becky ...nector person. Chris suggests bringing in someone else, Suzi and Helen and David OS (and the Manchester group possibly) and see what the best course of acti ...
    5 KB (828 words) - 15:54, 1 July 2014
  • * Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia * Present: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Cynthia ...
    8 KB (1,094 words) - 03:30, 29 March 2022
  • Pascale, Mike, Paul, David, Kimberly, Brenley, Li, Val, Mary, Brenley * '''Are PAINT annotations ISS, or should it be something else? '''(David) ...
    4 KB (599 words) - 11:15, 16 January 2018
  • Minute taker: Chris (first half) & David (2nd half) ===David, Judy, Suzi, Jane and Chris to report back to managers about meeting with J ...
    5 KB (710 words) - 12:49, 30 June 2014
  • *Format for documentation on github: Kimberly and David have been working on the SOP Google document. How are we going to transitio ...
    1,003 bytes (137 words) - 11:45, 7 April 2017
  • ATTENDEES: Jane, David, Harold, Heiko, Paola, Tanya, Judy AI: David to prepare cover letter. ? ...
    5 KB (824 words) - 17:33, 11 December 2012
  • * Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia * Present: David, Pascale, Seth, Suzi, Huaiyu, ...
    8 KB (1,175 words) - 02:32, 1 April 2022
  • ...members:''' Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris, Paul * '''Present:''' Pascale, Karen, Harold, Raymond, Jim, Tanya, David, Chris ...
    2 KB (343 words) - 01:53, 23 August 2022
  • * Flash updates on ontology stats and ontology focused projects, Melanie/David OS/Paola, 45 min talk total (among the 3 of us), 15 min discussion, Friday * Synapse project update (David OS, Paul T, Ruth L) ...
    3 KB (528 words) - 11:43, 6 April 2016
  • ...</span>@<span class="place">informatics.jax.org</span> (<span class="name">David Hill</span>)</span> (MGI) ...</span>@<span class="place">informatics.jax.org</span> (<span class="name">David Hill</span>)</span> (MGI) ...
    13 KB (1,980 words) - 19:22, 6 March 2020
  • *On call: Chris, David H., Huaiyu, Judy, Kimberly, Suzi ...
    1 KB (149 words) - 12:24, 3 January 2018
  • * Present: Kimberly, Pascale, Seth, Suzi, Paul, David, Cynthia, Chris * Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia ...
    3 KB (519 words) - 12:27, 8 December 2021
  • Participants: Michael Ashburner, Judy Blake, Mike Cherry, David Hill, Eurie Hong, Suzi Lewis, Chris Mungall.<br> ...ding. The new beta version of OBO-Edit will be able to make this easier. David recently added additional terms that could be cross-products. He would lik ...
    7 KB (1,085 words) - 12:45, 30 June 2014
  • * Present: Pascale, Paul, Judy, David, Kimberly, Seth, Huaiyu, Suzi # Kimberly, David, Laurent-Phlippe: Write usage notes: aim in 2 weeks: [https://docs.google ...
    4 KB (636 words) - 12:08, 15 April 2020
  • ...c DNA binding transcription factor activity <font color="green">(Karen and David's pref)</font> ...involved in preinitiation complex assembly <font color="green">(Karen and David's pref)</font> ...
    14 KB (1,999 words) - 19:10, 6 March 2020
  • Attendees: Amina, Midori, Harold, Jen, Karen C, David OS, Tanya # Bug from David: When you click on a search result item, it takes a while for the text edit ...
    8 KB (1,408 words) - 16:41, 30 June 2014
  • Present: Judy, Pascale, David Minutes:David ...
    4 KB (625 words) - 15:32, 27 June 2014
  • * Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia | '''PI: ''' Paul, '''PO:''' Kimberly, '''TL:''' '''Others:''' David, Pascale, Chris, Jim ...
    8 KB (1,117 words) - 13:18, 4 October 2022
  • ...impact on the work that people can do on GO? (esp: Chris, Seth, Kimberly, David - anyone else directly involved in Alliance and also key in GO?) Suggestion from PIs + follow discussion Kimberly, David, Pascale ...
    4 KB (675 words) - 10:33, 9 April 2019
  • Pascale, Karen, Harold, Peter, Jim, Tanya, Kimberly, David, Chris, Paul ...
    830 bytes (110 words) - 08:20, 30 November 2020
  • ...Pascale, Harold, Raymond, Val, Edith, Peter, Jim, Tanya, Karen, Kimberly, David, Chris, Paul * '''Present:''' Pascale, Raymond, Val, Jim, Tanya, Karen, Kimberly, David, Chris, Paul ...
    3 KB (388 words) - 02:20, 22 November 2022
  • Attendees: Melanie, David OS, David H, Peter d'E, Chris, Tanya IRI. (Melanie/David - please add details.) Chris: Who are the users? MC: Interpro Metagenomics ...
    4 KB (625 words) - 12:10, 21 July 2016
  • '''Attendees''': Paola, Kimberly, PaulT, David H, Judy, Moni, Pascale, Melanie, ChrisM. David H - this will likely end up being a duplicate. ...
    6 KB (1,083 words) - 11:06, 20 July 2016
  • ...oup members:''' Pascale, Raymond, Edith, Val, Jim, Tanya, Kimberly, Peter, David, Chris, Paul * '''Present:''' Pascale, Raymond,Jim, Tanya, Kimberly, Peter, David ...
    3 KB (374 words) - 05:02, 30 November 2023
  • *'''David, Tanya, Jane:''' Compose wiki documentation for ontology editors, with step *'''Midori, Jane, David, Tanya, Chris:''' Midori to resend draft (DONE), others to comment - sent - ...
    4 KB (635 words) - 12:52, 30 June 2014
  • :needed for (e.g.) David H & Tanya's GO work [brief description of why it needs improvement - not a ...dy to demo today after all, but Midori suggests inviting more people, incl David & Tanya, for demo next week ...
    3 KB (551 words) - 16:44, 30 June 2014
  • ...Tanya Z. Berardini3, Jennifer Deegan4, Amelia Ireland4, Midori A. Harris4, David P. Hill5 & Jane Lomax [http://precedings.nature.com/documents/3496/version/ ...
    857 bytes (110 words) - 20:50, 23 November 2009
  • David OS Participants: Kimberley, David H, Suzi, Judy, Huaiyu, Pascale, Paola, Melanie, Chris. ...
    6 KB (971 words) - 16:15, 18 January 2017
  • *http://noctua.berkeleybop.org/editor/graph/gomodel:56d1143000003110 (David H.) ...
    995 bytes (136 words) - 11:43, 28 March 2016
  • Present: Jen, Becky, Tanya, Donghui and Susan (with comments from Harold and David (Harold or David?) were emailed to check. ...
    9 KB (1,415 words) - 14:16, 30 June 2014
  • * David is now off the ontology rota. That leaves Karen, Harold and Pascale. ...
    1 KB (151 words) - 03:00, 22 June 2020
  • Jane, Becky, David O-S, David H, Tanya ''AI: David H ask Heiko to add a template: protein complex capable of MF''. ...
    4 KB (566 words) - 16:05, 15 July 2014
  • Minutes: David OS? David H: ...
    5 KB (784 words) - 07:21, 12 November 2016
  • Brain development, following content meeting (Jen, Erika, David leadership (David Hill and Midori); a draft of a merged summary ...
    4 KB (532 words) - 13:49, 30 June 2014
  • Attendees: Paola, Harold, Heiko, Tanya, David OS, Chris, Jane ...but this overall classification was implicitly agreed upon some time ago. David OS: a solution may be to tweak CARO (the Common Anatomy Reference Ontology) ...
    3 KB (567 words) - 15:06, 31 July 2014
  • ...is an issue with the placement in the ontology. It was too high. Chris and David were to look into, and if needed fix, the placement of the term Jane used f ...
    3 KB (448 words) - 12:20, 8 April 2014
  • Jane, Emily, Rama, David, Mike, Chris, Paul T and Paul S *David gave an update on the CHEBI/GOCHE project. There will be a meeting in Bosto ...
    2 KB (431 words) - 15:13, 27 June 2014
  • *Format for documentation on github: Kimberly and David have been working on the SOP Google document. How are we going to transitio ...
    962 bytes (135 words) - 13:43, 30 March 2017
  • |David Osumi-Sutherland * David Hill ...
    2 KB (345 words) - 11:54, 12 April 2019
  • EBI: Prudence, Becky, Susan, Aleks, Fredico, Paola, Rachael, David OS <br> MGI: Li, Judy, David<br> ...
    7 KB (1,194 words) - 09:48, 15 April 2019
  • *On call: Chris, Dan, David H., David OS, Giulia, Heiko, Helen, Kimberly, Melanie, Midori, Sabrina, Seth *Next week (6/15 and 6/16) David H. and Kimberly will be conducting a LEGO training session for MGI GO curat ...
    5 KB (778 words) - 14:59, 6 June 2016
  • * Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia * Regrets: David ...
    8 KB (1,155 words) - 12:19, 25 May 2022
  • Discussion with Amina, Chris and David. <br> David figured out the issue after looking at my file. The following is from his ...
    6 KB (941 words) - 17:25, 30 June 2014
  • ...kinase activity (BP) and kinase regulator activity (MF) seems redundant). David and Tanya to find different example. *'''David:'''submitting GO for review to become an OBO-foundry ontology. This is the ...
    3 KB (546 words) - 12:54, 30 June 2014
  • Attendees: Paola, Becky, Chris, David, Harold, Heiko, Tanya, Jane, Judy David, did you pass our thoughts on to Paul T? ...
    8 KB (1,225 words) - 15:50, 1 July 2014
  • Week beginning Jan. 16th: David *David Hill ...
    6 KB (946 words) - 14:27, 1 July 2014
  • Attendees: Paola, David H, Harold, Heiko, Tanya, Chris, Judy David H: you only directly regulate a process if you’re regulating a function t ...
    3 KB (426 words) - 12:20, 2 April 2015
  • | David Osumi-Sutherland | David Hill ...
    3 KB (401 words) - 16:18, 31 August 2015
  • ...members:''' Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris, Paul * '''Present: ''' Paul, Kimberly, Raymond, Chris, Tanya, David, Karen, Pascale, Federica (DisProt/IDPO) ...
    3 KB (444 words) - 15:44, 16 August 2021
  • **''David H'': No, we don't currently supply synonyms in the GAF for entities used in **''David H.'': This is part of the purpose of this exercise - to see what ID space ...
    10 KB (1,578 words) - 18:29, 11 November 2015
  • Attendees: Paola, Jane, David OS, Heiko, Tanya, David H, Harold David OS says that No, annotations do not propagate over 'capable_of', or any oth ...
    7 KB (1,094 words) - 17:01, 20 March 2014
  • ...If we did this we'd need more interesting results! Discuss next week with David and Tanya present. '''ACTION:''' David and Tanya to do second pass ...
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  • 11/25/2008 09:32:11 AM from David OS: Hiya<br> 11/25/2008 09:34:39 AM from David OS: only briefly<br> ...
    15 KB (2,241 words) - 10:20, 1 July 2014
  • Could David and Tanya please fill us in about any consensus reached at JGI last week... David and Tanya, did you get to look at this at JGI last week? ...
    3 KB (382 words) - 16:04, 15 July 2014
  • |David Hill |david.hill-at-jax.org ...
    3 KB (327 words) - 20:11, 21 March 2023
  • Present: Jennifer, Judy, Midori, Chris, David, Pascale :David provides background (also see Ref Gen call notes). Mainly a RG issue; not y ...
    6 KB (883 words) - 12:28, 30 June 2014
  • Minutes: David ...almost all of the regulates orphans and we will finalize the product while David is in CA in January. At that point, we will put to gether a plan to go live ...
    5 KB (915 words) - 12:37, 30 June 2014
  • * Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia | Need to complete documentation (Pascale + Kimberly, David, Paul, Patrick proof read) ...
    8 KB (1,087 words) - 11:53, 18 May 2022
  • * Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia David, Chris, Kimberly (from Wed. onward) others? ...
    5 KB (669 words) - 12:03, 20 July 2022
  • *On call: Barbara, Chris, David H, David OS, Harold, Jim, Karen, Kimberly, Pascale *AI: David OS will investigate further and then we'll decide what OBO-Edit can/should ...
    4 KB (643 words) - 13:09, 7 July 2017
  • - Questions to David Hill, Tanya Berardini, Chris Mungall ...
    1 KB (202 words) - 12:10, 9 February 2023
  • ...oup members:''' Pascale, Raymond, Val, Edith, Peter, Jim, Tanya, Kimberly, David, Chris, Paul * '''Present:''' Pascale, Raymond, Val, Edith, Peter, Jim, Tanya, Kimberly, David, Chris, Paul ...
    3 KB (398 words) - 04:32, 20 March 2023
  • * David Hill #* Editors (David, Tanya, Jen only) can edit new file for QC purposes only. However, new chan ...
    4 KB (623 words) - 10:22, 9 February 2023
  • 12/02/2008 09:36:30 AM from David OS: Seems sensible to me. I'm happy as long as the user one doesn't get sto 12/02/2008 09:38:16 AM from David OS: Harold has a good point - will the user dictionary be built on top some ...
    16 KB (2,296 words) - 10:24, 1 July 2014
  • ...burner, Judy Blake, Midori Harris, Jane Lomax, Jennifer Clark, Eurie Hong, David Hill, Chris Mungall, Rex Chisholm<br> * Midori & Alex: Adding references for content meetings. Also, David to do references for CNS meeting ...
    4 KB (610 words) - 12:36, 30 June 2014
  • * Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Judy, Paul, Chris * all annotations are in Noctua-dev, David found a few bugs. Those are being fixed, then Dustin will do another load. ...
    2 KB (391 words) - 11:49, 18 February 2021
  • ...members:''' Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris, Paul, Eric * '''Present:''' Pascale, Karen, Harold, Raymond, David, Kimberly, Jim, Chris, Peter, ...
    3 KB (412 words) - 06:12, 24 February 2021
  • **MAPK - David H. and Sabrina *On call: David H., George, Harold, Helen, Kevin, Kimberly, Li, Liz, Midori, Moni, Pascale, ...
    5 KB (710 words) - 12:05, 8 August 2017
  • David tested; works ...
    690 bytes (95 words) - 15:43, 1 July 2014
  • Should we push and merge the large chebi_import file? David will demo this on a call, but he'd rather wait until ...
    1 KB (141 words) - 11:31, 23 July 2018
  • *On call: Ben, Chris G., Chris M., David H., Dustin, Harold, Karen, Kimberly, Pascale, Rob, Sage, Seth, Suzi A., Tre ...
    1 KB (140 words) - 05:45, 16 April 2019
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