TAIR Progress Report for October 2008: Difference between revisions
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A unique partnership has been formed between Plant Physiology and TAIR to create an efficient mechanism that will ensure that genetic and molecular data on Arabidopsis published in the Journal are reliably captured in TAIR’s public database | A unique partnership has been formed between Plant Physiology and TAIR to create an efficient mechanism that will ensure that genetic and molecular data on Arabidopsis published in the Journal are reliably captured in TAIR’s public database | ||
[Plant Physiology 146:1022-1023 (2008)]. This collaboration - the first of its kind - | [Plant Physiology 146:1022-1023 (2008)]. This collaboration - the first of its kind - | ||
provides authors with the ability to submit manuscripts to the Journal for publication and gene information to the TAIR database at the same time. | provides authors with the ability to submit manuscripts to the Journal for publication and gene information to the TAIR database at the same time. Our annotation of Arabidopsis papers published in Plant Physiology has increased from 25% (2006 to 2007) to nearly 100% since May 2008. We hope this model can be extended to other journals, organisms, and databases. | ||
'''Contribution to PAMGO''' | '''Contribution to PAMGO''' |
Revision as of 10:22, 22 October 2008
TAIR, The Arabidopsis Information Resource, October, 2008
Staff working on GOC tasks
Tanya Berardini, Donghui Li
The total number of FTE working on GOC tasks is 1.5???.
Annotation Progress
Since April 2008, the following annotations have been added to TAIR
GO aspect | Number of annotations added | Number of genes update | Number of publications used |
---|---|---|---|
Biological Process | xxxx | xxx | xxx |
Molecular Function | xxxx | xxx | xxx |
Cellular Component | xxxx | xxx | xxx |
The following table shows our progress in completing the genes selected for the Reference Genome projects
Month | Number of Targets | Number of Arabidopsis genes | Number of genes completed | Proportion |
---|---|---|---|---|
May | xx | xx | xx | xx% |
June | xx | xx | xx | xx% |
July | xx | xx | xx | xx% |
August | xx | xx | xx | xx% |
September | xx | xx | xx | xx% |
October | xx | xx | xx | xx% |
Total | xx | xx | xx | xx% |
Methods and strategies for annotation
Other Highlights
Ontology Development Contributions
New Term Requests submitted by TAIR | xx |
Ontology changes submitted by TAIR | xx |
TAIR/Plant Physiology collaboration
A unique partnership has been formed between Plant Physiology and TAIR to create an efficient mechanism that will ensure that genetic and molecular data on Arabidopsis published in the Journal are reliably captured in TAIR’s public database [Plant Physiology 146:1022-1023 (2008)]. This collaboration - the first of its kind - provides authors with the ability to submit manuscripts to the Journal for publication and gene information to the TAIR database at the same time. Our annotation of Arabidopsis papers published in Plant Physiology has increased from 25% (2006 to 2007) to nearly 100% since May 2008. We hope this model can be extended to other journals, organisms, and databases.
Contribution to PAMGO Donghui Li has participated in the development of PAMGO, particularly the discussion involving programmed cell death. He is the co-author of a manuscript: Manipulation of programmed cell death during host-symbiont associations, Marcus C Chibucos, Candace W Collmer, Trudy Torto-Alalibo, Michelle Gwinn-Giglio, Magdalen Lindeberg, Donghui Li, Brett M Tyler1.
Annotation Outreach and User Advocacy Efforts
- ASPB (American Society of Plant Biologists) Plant Biology Meeting, June 29 2008, Merida Mexico
- 19th International Conference on Arabidopsis Research, July 23 2008, Montreal Canada
Publications