Talk:PAMGO 2007 RESOLVED ISSUES: Difference between revisions

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== The other organism string ==
== Secretory systems ==


There was a consensus to replace the phrases "by organism" and  "other organism" with the specific words "symbiont" and "host" where appropraite. Another excellent point raised had to do with the fact that, not all users will immediately know that the word symbiont is used by PAMGO to refer to mutualist, pathogens and commensalists. Suggesttion was to use those three words in the term and include as narrow synonyms.
All issues resolved. However in a conversation with Magdalen, she had mentioned that there was a discussion with GO members to obsolete the MF terms associated with the secretory systems. From the last check, they are still in there.
Also indicate in the comment field that this is used when annotating genes from pathogens, mutualists or commensalists


'''Action item 1'''


'''Action Item 1'''  
'''Obsolete the following'''
Most of these changes have been made by Jane already. If you come across any that still needs modification, please add to the list below....preferably GO ID and term.


'''Action Item 2'''
GO:0015428 protein secretor activity
 
GO:0015447 type II protein secretor activity
 
GO:0015448 type III protein (virulence-related) secretor activity
 
GO:001544  type IV protein (DNA-protein) secretor activity
 
GO:0015323 type V protein secretor activity

Latest revision as of 11:26, 29 October 2007

Secretory systems

All issues resolved. However in a conversation with Magdalen, she had mentioned that there was a discussion with GO members to obsolete the MF terms associated with the secretory systems. From the last check, they are still in there.

Action item 1

Obsolete the following

GO:0015428 protein secretor activity

GO:0015447 type II protein secretor activity

GO:0015448 type III protein (virulence-related) secretor activity

GO:001544 type IV protein (DNA-protein) secretor activity

GO:0015323 type V protein secretor activity

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