Tasks/Priorities 2012 (Archived): Difference between revisions

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# [[TermGenie]] templates
# [[TermGenie]] templates
## Regulation by
## Regulation by
## Metabolism
## Chemical entity templates
## ...
## Process-cell component templates

Revision as of 14:16, 7 March 2012

  1. Implementation of the JIRA project management software for the GO Consortium
  2. Common Annotation Framework. Determine the directions and deliverables for the next year.
  3. Full documentation of the minimal/ideal annotation format, including the gp2protein, gp2rna formats. (are the PIs/managers happy for the current draft circulated on the email list to be published on the wiki?)


Prioritization of annotation-related tasks.

We need to be able to start relying on other GO-NIH funded curators for contributions. Perhaps also set up some focused working group meetings to make headway.

  1. Clean up existing documentation on wiki and move to the GO website.
  2. Create new documentation for existing file formats: annotation/mapping files, annotation guidance (already mentioned, and set as a prioritised task for this next quarter)
  3. Annotation documentation guidance; what constitutes a redundant annotation, clarification of contributes_to qualifier. Specific guidance for transcription and apoptosis.
  4. Discuss and resolve new annotation methods: annotating to protein complexes, mapping of ECO to GO ev. codes, annotation relations
  5. define pipeline for PAINT curation and GOC annotation targets - to be coordinated with PAINT folks
  6. Evidence codes. Mapping of ECO to GO evidence codes. Resolve evidence code for MF-BP, BP-CC inferences
  7. QC checks, integrating centrally created annotations (reciprocals/inferrred). We need to collaborate with the software group as to how to implement for best impact.
  8. open up CANTO in some form to the public, communication with emerging annotation groups
  9. Transition_to_OWL
  10. TermGenie templates
    1. Regulation by
    2. Chemical entity templates
    3. Process-cell component templates