Taxon-GO Checks and Commentary - Part 10: Difference between revisions
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GO: | GO:0042633 hair cycle only_in Mammalia "taxon:40674" | ||
GO:0042473 outer ear morphogenesis | GO:0042473 outer ear morphogenesis | ||
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'''DONE''': I have added all appropriate checks down to here. | '''DONE''': I have added all appropriate checks down to here. | ||
==Errors detected and fixed== | ==Errors detected and fixed== | ||
The checks above produced 136 IEA errors which have been reported back for fixing. | The checks above produced 136 IEA errors which have been reported back for fixing. | ||
Revision as of 15:36, 23 February 2010
New checks suggested by AgBase
Example line:
GO:0007595 "lactation" only_in NCBITaxon:40674 "Mammalia" :: Ensembl ENSGALP00000029396 ENSGALP00000029396 GO:0007595 GO_REF:0000002 IEA InterPro:IPR003626 P protein NCBITaxon:9
031 20091214 UniProtKB
This IEA from Chicken is erroneously associates a protein with "lactation", which is restricted to mammals.
Other examples that should only be applied to mammals are:
GO:0001701 in utero embryonic development only_in Theria "taxon:32525"
GO:0007595 lactation only_in Mammalia "taxon:40674"
GO:0001890 placenta development only_in Theria "taxon:32525"
GO:0030879 mammary gland development only_in Mammalia "taxon:40674"
GO:0001967 suckling behaviour only_in Mammalia "taxon:40674"
GO:0001824 blastocyst development only_in Theria "taxon:32525"
NOTE: this classification needs checking; I am not sure if it is correct for marsupials.
GO:0007565 female pregnancy only_in Mammalia "taxon:40674"
GO:0042633 hair cycle only_in Mammalia "taxon:40674"
GO:0042473 outer ear morphogenesis
NOTE: chicken do not possess an outer ear, or pinna, as most mammals possess, but they do have ear lobes. Not sure whether this is included in the GO:0042473 definition
GO:0042476 odontogenesis
Exclude Aves "taxon:8782"
Include Tyrannosauridae "taxon:436493" (eg. Tyrannosaurus rex - big scary teeth)
GO:0042297 vocal learning only_in Passeriformes "taxon:9126"
(Need to exclude all other Aves)
DONE: I have added all appropriate checks down to here.
Errors detected and fixed
The checks above produced 136 IEA errors which have been reported back for fixing.