Transition to OWL 2010-2012: Difference between revisions

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Project lead: Chris Mungall
Project lead: Chris Mungall
== Purpose ==
Many tools of use to the [[Ontology_Development]] group


== Deliverables ==
== Deliverables ==
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Formal specification of syntax
Formal specification of syntax


status: in progress - see obo format section of obolog guide on:
http://berkeleybop.org/~cjm/obo2owl/obo-syntax.html


http://www.geneontology.org/GO.format.obo-1_3.shtml
Status: awaiting community comments


=== OWL2 Mapping ===
=== OWL2 Mapping ===


status: in progress
http://berkeleybop.org/~cjm/obo2owl/obo-syntax.html#5
 
Status: awaiting community comments


=== Java OBO Parser ===
=== Java OBO Parser ===


We need a ground-up rewrite of the OBO parser according to the spec. This will be a direct translation to OBO abstract syntax. This will form the basis of a future P4 parser
We need a ground-up rewrite of the OBO parser according to the spec. This will be a direct translation to OBO abstract syntax. This will form the basis of a future P4 parser
Status: alpha version
http://code.google.com/p/oboformat/


[[Category:SWUG Projects]]
[[Category:SWUG Projects]]

Revision as of 19:00, 17 August 2010

Project lead: Chris Mungall

Purpose

Many tools of use to the Ontology_Development group

Deliverables

obof1.4 guide

http://www.geneontology.org/GO.format.obo-1_4.shtml

Status: draft

obof1.4 syntax

Formal specification of syntax

http://berkeleybop.org/~cjm/obo2owl/obo-syntax.html

Status: awaiting community comments

OWL2 Mapping

http://berkeleybop.org/~cjm/obo2owl/obo-syntax.html#5

Status: awaiting community comments

Java OBO Parser

We need a ground-up rewrite of the OBO parser according to the spec. This will be a direct translation to OBO abstract syntax. This will form the basis of a future P4 parser

Status: alpha version

http://code.google.com/p/oboformat/

JUnit Test Suite

There must be a parser test suite covering all obo format tags

OWLAPI Bridge

Create a bridge layer between the OBO Parser and the OWLAPIv3 model.

Users can use the OBO Parser in its own right or seamlessly within the OWLAPI

Integration

Integrated into OWLAPIv3/Protege4

Add option to P4 to do simultaneous saves to obo/owl (this will facilitate OE/P4 synchronization)