Transition to OWL 2010-2012: Difference between revisions
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Project lead: Chris Mungall | Project lead: Chris Mungall | ||
== Purpose == | |||
Many tools of use to the [[Ontology_Development]] group | |||
== Deliverables == | == Deliverables == | ||
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Formal specification of syntax | Formal specification of syntax | ||
http://berkeleybop.org/~cjm/obo2owl/obo-syntax.html | |||
Status: awaiting community comments | |||
=== OWL2 Mapping === | === OWL2 Mapping === | ||
http://berkeleybop.org/~cjm/obo2owl/obo-syntax.html#5 | |||
Status: awaiting community comments | |||
=== Java OBO Parser === | === Java OBO Parser === | ||
We need a ground-up rewrite of the OBO parser according to the spec. This will be a direct translation to OBO abstract syntax. This will form the basis of a future P4 parser | We need a ground-up rewrite of the OBO parser according to the spec. This will be a direct translation to OBO abstract syntax. This will form the basis of a future P4 parser | ||
Status: alpha version | |||
http://code.google.com/p/oboformat/ | |||
[[Category:SWUG Projects]] | [[Category:SWUG Projects]] |
Revision as of 19:00, 17 August 2010
Project lead: Chris Mungall
Purpose
Many tools of use to the Ontology_Development group
Deliverables
obof1.4 guide
http://www.geneontology.org/GO.format.obo-1_4.shtml
Status: draft
obof1.4 syntax
Formal specification of syntax
http://berkeleybop.org/~cjm/obo2owl/obo-syntax.html
Status: awaiting community comments
OWL2 Mapping
http://berkeleybop.org/~cjm/obo2owl/obo-syntax.html#5
Status: awaiting community comments
Java OBO Parser
We need a ground-up rewrite of the OBO parser according to the spec. This will be a direct translation to OBO abstract syntax. This will form the basis of a future P4 parser
Status: alpha version
http://code.google.com/p/oboformat/
JUnit Test Suite
There must be a parser test suite covering all obo format tags
OWLAPI Bridge
Create a bridge layer between the OBO Parser and the OWLAPIv3 model.
Users can use the OBO Parser in its own right or seamlessly within the OWLAPI
Integration
Integrated into OWLAPIv3/Protege4
Add option to P4 to do simultaneous saves to obo/owl (this will facilitate OE/P4 synchronization)