Transition to OWL 2010-2012

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Project lead: Chris Mungall

Deliverables

obof1.4 guide

http://www.geneontology.org/GO.format.obo-1_4.shtml

Status: draft

obof1.4 syntax

Formal specification of syntax

status: in progress - see obo format section of obolog guide on:

http://www.geneontology.org/GO.format.obo-1_3.shtml

OWL2 Mapping

status: in progress

Java OBO Parser

We need a ground-up rewrite of the OBO parser according to the spec. This will be a direct translation to OBO abstract syntax. This will form the basis of a future P4 parser

JUnit Test Suite

There must be a parser test suite covering all obo format tags

OWLAPI Bridge

Create a bridge layer between the OBO Parser and the OWLAPIv3 model.

Users can use the OBO Parser in its own right or seamlessly within the OWLAPI

Integration