Transmembrane transporters: Difference between revisions
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[[Category:Transporters]] | |||
'''April 13th 2010''' | '''April 13th 2010''' | ||
Val has been requesting alot of x transmembrane transport terms for her GOslim mappings. We suspect that lots of the current 'x transport' terms refer to transport across a membrane but the TM parentage is currently missing. To avoid redundancy (and adding in x transmembrane transport terms for each) can any of the following be given the direct parent 'transmembrane transport' ? | Val has been requesting alot of x transmembrane transport terms for her GOslim mappings. We suspect that lots of the current 'x transport' terms refer to transport across a membrane but the TM parentage is currently missing. To avoid redundancy (and adding in x transmembrane transport terms for each) can any of the following be given the direct parent 'transmembrane transport' ? | ||
The definition of transport ; GO:0006810 is: | |||
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism by means of some external agent such as a transporter or pore. | |||
''Note from Pascale: According to the QuickGO change log, this was never the definition for 'transmembrane transport. The first definition was 'The process in which a solute is transported from one side of a membrane to the other.', changed to 'The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other' in 2015. I reverted it back in Oct 2017.'' | |||
The definition of transmembrane transport ; GO:0055085 is: | |||
The process whereby a solute is transported from one side of a membrane to the other. This process includes the actual movement of the solute, and any regulation and preparatory steps, such as reduction of the solute. | |||
This is a list of transport terms that have a transmembrane transporter child, but no x transmembrane transport child: | This is a list of transport terms that have a transmembrane transporter child, but no x transmembrane transport child: | ||
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*ethanolamine transport | *ethanolamine transport | ||
*fatty acid transport | *fatty acid transport | ||
*fluid transport | **fluid transport (MORE GENERAL... DO NOT MOVE) | ||
*formate transport | *formate transport | ||
*fructose transport | *fructose transport | ||
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*histidine transport | *histidine transport | ||
*homoserine transport | *homoserine transport | ||
*hormone transport | **hormone transport (Val says no) | ||
*hydrogen transport | *hydrogen transport | ||
*hydroxyectoine transport | *hydroxyectoine transport | ||
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*icosanoid transport | *icosanoid transport | ||
*inorganic anion transport | *inorganic anion transport | ||
*iron chelate transport | *iron chelate transport | ||
*isoleucine transport | *isoleucine transport | ||
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*lactose transport | *lactose transport | ||
*leucine transport | *leucine transport | ||
*lipid transport | **lipid transport (Val says no) | ||
*lysine transport | *lysine transport | ||
*maltodextrin transport | *maltodextrin transport | ||
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*N-acetylgalactosamine transport | *N-acetylgalactosamine transport | ||
*N-acetylglucosamine transport | *N-acetylglucosamine transport | ||
*neurotransmitter transport | **neurotransmitter transport (have some non-TM transport, eg in vesicles: DO NOT MOVE) | ||
*neutral amino acid transport | *neutral amino acid transport | ||
*nitric oxide transport | *nitric oxide transport | ||
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*propionate transport | *propionate transport | ||
*prostaglandin transport | *prostaglandin transport | ||
*protein transport | **protein transport (Val says no) | ||
*proton transport | *proton transport | ||
* | *putrescine transport | ||
*pyridoxal phosphate transport | *pyridoxal phosphate transport | ||
*pyridoxal transport | *pyridoxal transport | ||
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*salicin transport | *salicin transport | ||
*serine transport | *serine transport | ||
*serotonin transport | **serotonin transport (Val says no) | ||
*shikimate transport | *shikimate transport | ||
*sialic acid transport | *sialic acid transport | ||
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*spermidine transport | *spermidine transport | ||
*spermine transport | *spermine transport | ||
*sterol transport | **sterol transport (Val says no) | ||
*succinate transport | *succinate transport | ||
*sucrose transport | *sucrose transport | ||
*sulfur amino acid transport | *sulfur amino acid transport | ||
*synaptic vesicle amine transport | **synaptic vesicle amine transport (Val says no) | ||
*synaptic vesicle transport | **synaptic vesicle transport (Val says no) | ||
*tartrate transport | *tartrate transport | ||
*taurine transport | *taurine transport | ||
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*uronic acid transport | *uronic acid transport | ||
*valine transport | *valine transport | ||
*water transport | **water transport (more general.... DO NOT MOVE) | ||
---- | ---- |
Latest revision as of 09:10, 26 October 2017
April 13th 2010
Val has been requesting alot of x transmembrane transport terms for her GOslim mappings. We suspect that lots of the current 'x transport' terms refer to transport across a membrane but the TM parentage is currently missing. To avoid redundancy (and adding in x transmembrane transport terms for each) can any of the following be given the direct parent 'transmembrane transport' ?
The definition of transport ; GO:0006810 is: The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism by means of some external agent such as a transporter or pore.
Note from Pascale: According to the QuickGO change log, this was never the definition for 'transmembrane transport. The first definition was 'The process in which a solute is transported from one side of a membrane to the other.', changed to 'The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other' in 2015. I reverted it back in Oct 2017.
The definition of transmembrane transport ; GO:0055085 is: The process whereby a solute is transported from one side of a membrane to the other. This process includes the actual movement of the solute, and any regulation and preparatory steps, such as reduction of the solute.
This is a list of transport terms that have a transmembrane transporter child, but no x transmembrane transport child:
- 2-aminoethylphosphonate transport
- 3-hydroxyphenyl propanoate transport
- 3-phenylpropionic acid transport
- acetylcholine transport
- acidic amino acid transport
- alanine transport
- aldarate transport
- aldonate transport
- allantoate transport
- allose transport
- alpha-glucoside transport
- alpha-ketoglutarate transport
- amide transport
- amine transport
- anion transport
- arabinitol transport
- arabinose transport
- arbutin transport
- arginine transport
- aromatic amino acid transport
- asparagine transport
- aspartate transport
- auxin transport
- basic amino acid transport
- beta-alanine transport
- beta-glucan transport (Val says no)
- beta-glucoside transport (Val says no)
- betaine transport
- bile acid and bile salt tranbilirubin transport (Val says no)
- bilirubin transport
- boron transport
- branched-chain aliphatic amino acid transport
- C4-dicarboxylate transport
- cadaverine transport
- canalicular bile acid transport
- capsular polysaccharide transport
- carboxylic acid transport
- catecholamine transport
- cation transport
- cellobiose transport
- chloride transport
- choline transport
- chromaffin granule amine transport
- citrate transport
- coenzyme transport
- cofactor transport
- cysteine transport
- D-alanine transport
- D-amino acid transport
- D-galactarate transport
- D-galactonate transport
- D-glucuronate transport
- D-methionine transport
- D-ribose transport
- D-serine transport
- D-xylose transport
- dextrin transport
- di-, tri-valent inorganic cation transport
- dicarboxylic acid transport
- dicarboxylic acid transport
- dopamine transport
- drug transport
- ectoine transport
- ethanolamine transport
- fatty acid transport
- fluid transport (MORE GENERAL... DO NOT MOVE)
- formate transport
- fructose transport
- fucose transport
- fumarate transport
- galactitol transport
- galactose transport
- galacturonate transport
- gas transport
- glucose transport
- glucose-6-phosphate transport
- glucoside transport
- glucosylglycerol transport
- glucuronate transport
- glucuronoside transport
- glutamine transport
- glycerol transport
- glycerol-3-phosphate transport
- glycine transport
- hexose phosphate transport
- hexuronate transport
- hexuronide transport
- histidine transport
- homoserine transport
- hormone transport (Val says no)
- hydrogen transport
- hydroxyectoine transport
- hydroxyproline transport
- icosanoid transport
- inorganic anion transport
- iron chelate transport
- isoleucine transport
- isopropylmalate transport
- L-alanine transport
- L-amino acid transport
- L-ascorbic acid transport
- L-cystine transport
- L-glutamate transport
- L-idonate transport
- L-serine transport
- lactate transport
- lactone transport
- lactose transport
- leucine transport
- lipid transport (Val says no)
- lysine transport
- maltodextrin transport
- maltose transport
- mannitol transport
- mannose transport
- mannosylglycerate transport
- melibiose transport
- metal ion transport
- methionine transport
- methylammonium transport
- methylgalactoside transport
- mevalonate transport
- monoamine transport
- monocarboxylic acid transport
- monosaccharide transport
- monovalent inorganic cation transport
- multidrug transport (already directly under TM transport)
- myo-inositol transport
- N-acetylgalactosamine transport
- N-acetylglucosamine transport
- neurotransmitter transport (have some non-TM transport, eg in vesicles: DO NOT MOVE)
- neutral amino acid transport
- nitric oxide transport
- norepinephrine transport
- nucleobase, nucleoside, nucleotide and nucleic acid transport
- nucleotide transport
- nucleotide-sugar transport
- oligogalacturonide transport
- oligopeptide transport
- oligosaccharide transport
- organic acid transport
- organic alcohol transport
- organic anion transport
- organic cation transport
- ornithine transport
- oxalate transport
- oxaloacetate transport
- pentose transport
- peptide transport
- phenylalanine transport
- phospholipid transport
- phosphonate transport
- polyamine transport
- polyol transport
- polysaccharide transport
- positive regulation of transport
- proline transport
- propanediol transport
- propionate transport
- prostaglandin transport
- protein transport (Val says no)
- proton transport
- putrescine transport
- pyridoxal phosphate transport
- pyridoxal transport
- pyridoxamine transport
- pyridoxine transport
- pyrimidine nucleotide-sugar transport
- pyruvate transport
- quaternary ammonium group transport
- raffinose transport
- rhamnose transport
- S-adenosylmethionine transport
- S-methylmethionine transport
- salicin transport
- serine transport
- serotonin transport (Val says no)
- shikimate transport
- sialic acid transport
- siderophore transport
- siderophore-iron transport
- sorbitol transport
- spermidine transport
- spermine transport
- sterol transport (Val says no)
- succinate transport
- sucrose transport
- sulfur amino acid transport
- synaptic vesicle amine transport (Val says no)
- synaptic vesicle transport (Val says no)
- tartrate transport
- taurine transport
- teichoic acid transport
- thiamin transport
- threonine transport
- thyroid hormone transport (Val says no)
- transition metal ion transport
- trehalose transport
- tricarboxylic acid transport
- tryptophan transport
- tyrosine transport
- urea transport (Val says no)
- uronic acid transport
- valine transport
- water transport (more general.... DO NOT MOVE)
This is a list of x transmembrane transport terms. Can any of them be merged with their 'x transport' parent, and the 'x transport' parent be moved direclty under transmembrane transport?
- acetyl-CoA transmembrane transport
- amino acid transmembrane transport
- boron transmembrane transport
- carbohydrate transmembrane transport
- hexose transmembrane transport
- gluconate transmembrane transport
- triose phosphate transmembrane transport
- carbon dioxide transmembrane transport
- coenzyme A transmembrane transport
- dipeptide transmembrane transport
- FAD transmembrane transport
- glutathione transmembrane transport
- heme transmembrane transport
- ion transmembrane transport
- acetate transmembrane transport
- cadmium ion transmembrane transport
- calcium ion transmembrane transport
- copper ion transmembrane transport
- iron ion transmembrane transport
- malate transmembrane transport
- manganese ion transmembrane transport
- nickel ion transmembrane transport
- phosphate transmembrane transport
- succinate transmembrane transport
- zinc ion transmembrane transport
- NAD transmembrane transport
- nicotinamide mononucleotide transmembrane transport
- purine nucleoside transmembrane transport
- sterol transmembrane transport
- tripeptide transmembrane transport