Uberon: Difference between revisions
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Combination of Uberon, MA and EMAP plus bridging axioms: | Combination of Uberon, MA and EMAP plus bridging axioms: | ||
* http://purl.obolibrary.org/obo/uberon/bridge/collected-mouse-with-stages. | * http://purl.obolibrary.org/obo/uberon/bridge/collected-mouse-with-stages.owl | ||
== References == | == References == |
Revision as of 22:13, 25 January 2013
Uberon is a multi-species anatomy ontology covering metazoans (animals). It's structure is well-aligned with the development hierarchy in GO.
Uses in GO
There are two primary uses of Uberon in GO:
- Logical definitions (cross-products) - see Extensions/x-metazoan-anatomy
- Annotation Extension (col 16 annotation)
Connections with other AOs
Mouse
MGI c16 annotations include use of MA and EMAP.
EMAP:
Note that EMAP is staged - each term represents a specific structure at a specific stage. This information is retained in the axioms linking back to Uberon
- http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-emap.owl
- http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-emap.obo
MA:
- http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ma.owl
- http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ma.obo
Combination of Uberon, MA and EMAP plus bridging axioms:
References
Mungall, C. J., Torniai, C., Gkoutos, G. V., Lewis, S. E., and Haendel, M. A. (2012) Uberon, an integrative multi-species anatomy ontology Genome Biology 13, R5. http://genomebiology.com/2012/13/1/R5
See Also
- http://uberon.org - homepage
- Extensions/x-metazoan-anatomy