Uberon: Difference between revisions
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* Logical definitions (cross-products) - see [[Extensions/x-metazoan-anatomy]] | * Logical definitions (cross-products) - see [[Extensions/x-metazoan-anatomy]] | ||
* [[Annotation Extension]] (col 16 annotation) | * [[Annotation Extension]] (col 16 annotation) | ||
The logical definitions can be used in conjunction with annotation extensions to provide automatic "deepening" of annotations, and automatic verification. | |||
== Connections with other AOs == | == Connections with other AOs == |
Revision as of 19:21, 20 November 2013
Uberon is a multi-species anatomy ontology covering metazoans (animals). It's structure is well-aligned with the development hierarchy in GO.
Uses in GO
There are two primary uses of Uberon in GO:
- Logical definitions (cross-products) - see Extensions/x-metazoan-anatomy
- Annotation Extension (col 16 annotation)
The logical definitions can be used in conjunction with annotation extensions to provide automatic "deepening" of annotations, and automatic verification.
Connections with other AOs
Mouse
MGI c16 annotations include use of MA and EMAP.
EMAP:
Note that EMAP is staged - each term represents a specific structure at a specific stage. This information is retained in the axioms linking back to Uberon
- http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-emap.owl
- http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-emap.obo
MA:
- http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ma.owl
- http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ma.obo
Combination of Uberon, MA and EMAP plus bridging axioms:
References
Mungall, C. J., Torniai, C., Gkoutos, G. V., Lewis, S. E., and Haendel, M. A. (2012) Uberon, an integrative multi-species anatomy ontology Genome Biology 13, R5. http://genomebiology.com/2012/13/1/R5
See Also
- http://uberon.org - homepage
- Extensions/x-metazoan-anatomy