UniProt-GOA datasources
UniProt-GOA maintains annotations from several sources. Not all these sources are in the GOA.yaml file, only those for which GOA produces a separate GAF/GPAD file.
This is the full list of datasts maintained by GOA, as of Nov 1, 2019.
Up to date data is here: ftp://ftp.ebi.ac.uk/pub/contrib/goa/P2GO_SOURCES.dat
GOA internal sources
Those are fully integrated into Protein2GO and in the GOA database, and are edited via Protein2GO
- AgBase
- Alzheimers Project at University of Toronto
- AlzheimersResearchUK-UCL
- Automated Function Prediction SIG CAFA Experiment (BHF-UCL Curators)
- Automated Function Prediction SIG CAFA Experiment (UniProt Curators)
- BHF-UCL
- CACAO
- CBI Computational Genomics Group
- Complex Portal (via Protein2GO)
- DFLAT
- DictyBase (specific GAF file generated)
- Evelyn's spkw2go file
- FlyBase (specific GAF file generated)
- GDB
- GO_Central
- Gramene
- HGNC
- HGNC-UCL
- J. Craig Venter Institute
- LIFEdb
- Microbial ENergy processes Gene Ontology Project
- MTBBASE
- NTNU
- PAMGO M. grisea
- ParkinsonsUK-UCL
- Proteome Inc
- Roslin Institute
- SGD (specific GAF file generated)
- Structure-Function Linkage Database
- SynGO
- SynGO-UCL (UCL Curators)
- SYSCILIA_CCNET
- TAIR (via CCC)
- TIGR
- UniProt (EBI Curators)
- UniProt (PIR Curators)
- UniProt (SIB Curators)
- WormBase (specific GAF file generated)
- YuBioLab
GOA external sources: Integrated in GOA for viewing; reloaded daily
- D.Hill's spkw2go file
- EcoCyc**
- EcoliWiki**
- GeneDB P. falciparum**
- GO Reference Genomes -> separately loaded by the GO pipeline
- Human Protein Atlas (obtained from https://www.proteinatlas.org/download/subcellular_location.tsv.zip)
- MGI -> separately loaded by the GO pipeline
- PomBase -> separately loaded by the GO pipeline
- PseudoCAP -> separately loaded by the GO pipeline
- RGD -> separately loaded by the GO pipeline
- SGN**
- SynGO (via Noctua) -> OK has its own file location
- ZFIN -> separately loaded by the GO pipeline
** Need to have a location of the GAF file compliant with the guidelines (ie, not on the GO SVN).
Review Status
Last reviewed: November 1, 2019