UniProt-GOA datasources

UniProt-GOA maintains annotations from several sources. Not all these sources are in the goa.yaml file, only those for which GOA produces a separate GAF/GPAD file.

This is the full list of data sources is here [1].

GOA internal sources

Those are fully integrated into Protein2GO and in the GOA database, and are edited via Protein2GO

• AgBase
• Alzheimers_University_of_Toronto
• BHF-UCL
  • ARUK-UCL
  • HGNC-UCL
  • ParkinsonsUK-UCL
• CACAO
• CAFA
• CBI Computational Genomics Group (CCG)
• DFLAT
• dictyBase
• FlyBase
• Human Genome Database (GDB)
• GO_Central
• Gramene (GR)
• HGNC
• J. Craig Venter Institute (JCVI)
• LIFEdb
• Microbial ENergy processes Gene Ontology Project (MENGO)
• MTBBASE
• NTNU_SB
• PAMGO_MGG
• PINC
• Roslin_Institute
• Structure-Function Linkage Database (SFLD)
• SGD
• SYSCILIA_CCNET
• SynGO
• SynGO-UCL
• TIGR
• UniProt
• WormBase (WB)
• YuBioLab

Automated pipelines

• EC2GO GO_REF:0000002
• Ensembl Compara GO_REF:0000107
• EnsemblFungi GO_REF:0000107
• EnsemblMetazoa GO_REF:0000107
• EnsemblPlants GO_REF:0000107
• EnsemblProtists GO_REF:0000107
• GOC GOC Gene Ontology Consortium GO_REF:0000108
• InterPro2GO GO_REF:0000002
• RNAcentral GO_REF:0000115
• UniPathway2GO GO_REF:0000041
• UniProt Keywords2GO GO_REF:0000004
• UniProt Subcellular Location2GO GO_REF:0000023
• UniRule2GO GO_REF:0000104

GOCentral/ Noctua Internal sources

• GO_Central (IBA) -> separately loaded by the GO pipeline - GOREF:0000033
• MGI
• XenBase
• ZFIN

Review Status

Last reviewed: November 30, 2023