XP:Progress 2008: Difference between revisions

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* We have XP defs for 10712/27589 of GO terms
* We have XP defs for 10712/27589 of GO terms
* 1500-2000 links added or moved in GO
* 1500-2000 links added or moved in GO based on reasoner results


{|class="wikitable" style="text-align:center border="1"
|+ caption
|-
!
! colspan="2" | dynamic
! colspan="4" | spatial
|-
!
! colspan="2" | bioprocess
! colspan="3" | anatomic
! colspan="1" | chemical
|-
!
! biological_process
! molecular_function
! cell
! cellular_component
! uberon
! chebi
|-
! biological_process
| 4133 [http://wiki.geneontology.org/index.php/Regulation_cross-products go_xp_regulation][http://wiki.geneontology.org/index.php/XP:biological_process_xp_self biological_process_xp_self]
|
| 527 [http://wiki.geneontology.org/index.php/XP:biological_process_xp_cell biological_process_xp_cell]
| 724 [http://wiki.geneontology.org/index.php/XP:biological_process_xp_cellular_component biological_process_xp_cellular_component]
| 516 [http://wiki.geneontology.org/index.php/XP:biological_process_xp_anatomy biological_process_xp_uber_anatomy]
| 2901 [http://wiki.geneontology.org/index.php/XP:biological_process_xp_chebi go_xp_chebi]
|-
! molecular_function
| [http://wiki.geneontology.org/index.php/XP:molecular_function_xp_regulators molecular_function_xp_regulators]
| [http://wiki.geneontology.org/index.php/XP:molecular_function_xp_regulators molecular_function_xp_regulators]
|
|
|
| [http://wiki.geneontology.org/index.php/XP:biological_process_xp_chebi go_xp_chebi]
|-
! cellular_component
| [http://wiki.geneontology.org/index.php/XP:cellular_component_xp_go cellular_component_xp_go]
| [http://wiki.geneontology.org/index.php/XP:cellular_component_xp_go cellular_component_xp_go]
|
| [http://wiki.geneontology.org/index.php/XP:cellular_component_xp_self cellular_component_xp_self]
|
|
|}




Revision as of 17:40, 17 October 2008

Progress as of 2008/10/20

Motivation and Goals

  • GO has become too large and complex to manage manually
  • Errors of omission and commission negatively impact users in many ways
  • Provide connections between GO and other ontologies

Methods

  • Create computable logical definitions (Cross Products) for GO terms using (a) other GO terms (b) terms from other ontologies
  • Use logic-based reasoning to find inconsistencies and errors

Results 2008

  • We have XP defs for 10712/27589 of GO terms
  • 1500-2000 links added or moved in GO based on reasoner results


caption
dynamic spatial
bioprocess anatomic chemical
biological_process molecular_function cell cellular_component uberon chebi
biological_process 4133 go_xp_regulationbiological_process_xp_self 527 biological_process_xp_cell 724 biological_process_xp_cellular_component 516 biological_process_xp_uber_anatomy 2901 go_xp_chebi
molecular_function molecular_function_xp_regulators molecular_function_xp_regulators go_xp_chebi
cellular_component cellular_component_xp_go cellular_component_xp_go cellular_component_xp_self


Internal Cross Products

Purely within GO

Regulation Cross Products

Cellular Component internal xps

BP XP CC

External Cross Products

Uber Anatomy Ontology

CHEBI

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