XP:Progress 2008
Progress as of 2008/10/20
Motivation and Goals
- GO has become too large and complex to manage manually
- Errors of omission and commission negatively impact users in many ways
- Provide connections between GO and other ontologies
Methods
- Create computable logical definitions (Cross Products) for GO terms using (a) other GO terms (b) terms from other ontologies
- Use logic-based reasoning to find inconsistencies and errors
Results 2008
- We have XP defs for 10712/27589 of GO terms
- 1500-2000 links added or moved in GO based on reasoner results
dynamic | spatial | |||||
---|---|---|---|---|---|---|
bioprocess | anatomic | chemical | ||||
biological_process | molecular_function | cell | cellular_component | uberon | chebi | |
biological_process | 4133 go_xp_regulation bp_xp_bp | 527 bp_xp_cell | 724 bp_xp_cc | 516 bp_xp_uberon | 2901 bp_xp_chebi | |
molecular_function | 134 mf_xp_regulators | 84 mf_xp_regulators | 360 mf_xp_chebi | |||
cellular_component | 24 cc_xp_go | 148 cc_xp_go | 715 cc_xp_cc |
Internal Cross Products
Purely within GO