Difference between revisions of "XP:biological process xp cellular component"

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(New page: See the [http://www.geneontology.org/scratch/xps/ go/scratch/xps] directory * [http://www.geneontology.org/scratch/xps/biological_process_xp_cellular_component.obo xp obo file] * [http:...)
 
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XPs defining biological processes in terms of cellular components; example:
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  [Term]
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  id: GO:0000054 ! ribosome export from nucleus
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  intersection_of: GO:0051168 {namespace=biological_process_xp_cellular_component} ! nuclear export
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  intersection_of: OBO_REL:results_in_transport_of GO:0005840 {namespace=biological_process_xp_cellular_component} ! ribosome
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i.e. ribosome export from nucleus = nuclear export THAT results_in_transport_of ribosome
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(Experimenting with the use of namespace tags as an easy way to separate out xp content from main GO)
  
 
See the [http://www.geneontology.org/scratch/xps/ go/scratch/xps] directory
 
See the [http://www.geneontology.org/scratch/xps/ go/scratch/xps] directory
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* [http://www.geneontology.org/scratch/xps/biological_process_xp_cellular_component.obo xp obo file]
 
* [http://www.geneontology.org/scratch/xps/biological_process_xp_cellular_component.obo xp obo file]
 
* [http://www.geneontology.org/scratch/xps/biological_process_xp_cellular_component-imports.obo imports file] - point oboedit at this
 
* [http://www.geneontology.org/scratch/xps/biological_process_xp_cellular_component-imports.obo imports file] - point oboedit at this
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This xp file has been registered in the OBO xps metadata so it is available here:
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* [http://www.berkeleybop.org/ontologies/#bp_xp_cellular_component downloads page]
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* [http://www.berkeleybop.org/ontologies/obo-all/bp_xp_cellular_component/bp_xp_cellular_component.xp.html HTML]
  
 
Missing Link Report:
 
Missing Link Report:

Revision as of 17:40, 29 April 2008

XPs defining biological processes in terms of cellular components; example:

 [Term]
 id: GO:0000054 ! ribosome export from nucleus
 intersection_of: GO:0051168 {namespace=biological_process_xp_cellular_component} ! nuclear export
 intersection_of: OBO_REL:results_in_transport_of GO:0005840 {namespace=biological_process_xp_cellular_component} ! ribosome

i.e. ribosome export from nucleus = nuclear export THAT results_in_transport_of ribosome

(Experimenting with the use of namespace tags as an easy way to separate out xp content from main GO)

See the go/scratch/xps directory

This xp file has been registered in the OBO xps metadata so it is available here:

Missing Link Report: