XP:biological process xp cellular component: Difference between revisions
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XPs defining biological processes in terms of cellular components; example: | XPs defining biological processes in terms of cellular components; example: | ||
<pre> | |||
[Term] | |||
id: GO:0010020 ! chloroplast fission | |||
intersection_of: GO:0048285 ! organelle fission | |||
intersection_of: OBO_REL:results_in_division_of GO:0009507 ! chloroplast | |||
</pre> | |||
i.e. | i.e. '''chloroplast fission''' <sub>=def</sub> '''organelle fission''' THAT [[results_in_division_of]] '''chloroplast''' | ||
== Availability == | |||
See the [http://www.geneontology.org/scratch/xps/ go/scratch/xps] directory | See the [http://www.geneontology.org/scratch/xps/ go/scratch/xps] directory | ||
Line 20: | Line 22: | ||
* [http://www.berkeleybop.org/ontologies/obo-all/bp_xp_cellular_component/bp_xp_cellular_component.xp.html HTML] | * [http://www.berkeleybop.org/ontologies/obo-all/bp_xp_cellular_component/bp_xp_cellular_component.xp.html HTML] | ||
Missing | == Methods == | ||
=== mitochondrial X === | |||
Terms of the form "mitochondrial ''X''" are typically defined as | |||
* An ''X'' that [[unfolds_in]] a '''mitochondrion''' | |||
Here ''unfolds_in'' is a relation between a process and the location of the participants throughout the process | |||
E.g. | |||
<pre> | |||
[Term] | |||
id: GO:0000963 ! mitochondrial RNA processing | |||
intersection_of: GO:0006396 ! RNA processing | |||
intersection_of: OBO_REL:unfolds_in GO:0005739 ! mitochondrion | |||
</pre> | |||
See [https://sourceforge.net/tracker/?func=detail&atid=440764&aid=2020664&group_id=36855 this sf item] for clarification on RNA processing terms | |||
== Results == | |||
=== Missing Parentage Reports === | |||
* http://sourceforge.net/tracker/index.php?func=detail&aid=1939817&group_id=36855&atid=440764 | * http://sourceforge.net/tracker/index.php?func=detail&aid=1939817&group_id=36855&atid=440764 |
Revision as of 14:51, 17 July 2008
XPs defining biological processes in terms of cellular components; example:
[Term] id: GO:0010020 ! chloroplast fission intersection_of: GO:0048285 ! organelle fission intersection_of: OBO_REL:results_in_division_of GO:0009507 ! chloroplast
i.e. chloroplast fission =def organelle fission THAT results_in_division_of chloroplast
Availability
See the go/scratch/xps directory
- xp obo file
- imports file - point oboedit at this
This xp file has been registered in the OBO xps metadata so it is available here:
Methods
mitochondrial X
Terms of the form "mitochondrial X" are typically defined as
* An X that unfolds_in a mitochondrion
Here unfolds_in is a relation between a process and the location of the participants throughout the process
E.g.
[Term] id: GO:0000963 ! mitochondrial RNA processing intersection_of: GO:0006396 ! RNA processing intersection_of: OBO_REL:unfolds_in GO:0005739 ! mitochondrion
See this sf item for clarification on RNA processing terms
Results
Missing Parentage Reports
- http://sourceforge.net/tracker/index.php?func=detail&aid=1939817&group_id=36855&atid=440764
- http://sourceforge.net/tracker/index.php?func=detail&aid=2015221&group_id=36855&atid=440764 -- made after it was clarified CCs are anatomical structures
- http://sourceforge.net/tracker/index.php?func=detail&aid=2016121&group_id=36855&atid=440764