Difference between revisions of "XP:biological process xp cellular component"

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(Methods)
(biogenesis, organization etc)
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=== biogenesis, organization etc ===
 
=== biogenesis, organization etc ===
  
Awaiting clarification. See:
+
Awaiting clarification. See: [[Cellular_component_processes]]
 +
 
 +
Existing xp defs may be changed once this is resolved
  
 
== Results ==
 
== Results ==

Revision as of 11:53, 17 July 2008

XPs defining biological processes in terms of cellular components; example:

[Term]
id: GO:0010020 ! chloroplast fission
intersection_of: GO:0048285  ! organelle fission
intersection_of: OBO_REL:results_in_division_of GO:0009507 ! chloroplast

i.e. chloroplast fission =def organelle fission THAT results_in_division_of chloroplast

Availability

See the go/scratch/xps directory

This xp file has been registered in the OBO xps metadata so it is available here:

Methods

An initial parse was made using Obol. The results were then manually vetted by cjm, and new xp defs manually added

mitochondrial X

Terms of the form "mitochondrial X" are typically defined as

* An X that unfolds_in a mitochondrion

Here unfolds_in is a relation between a process and the location of the participants throughout the process

E.g.

[Term]
id: GO:0000963 ! mitochondrial RNA processing
intersection_of: GO:0006396 ! RNA processing
intersection_of: OBO_REL:unfolds_in GO:0005739 ! mitochondrion

See this sf item for clarification on RNA processing terms

biogenesis, organization etc

Awaiting clarification. See: Cellular_component_processes

Existing xp defs may be changed once this is resolved

Results

Missing Parentage Reports