XP:biological process xp cellular component: Difference between revisions
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(New page: See the [http://www.geneontology.org/scratch/xps/ go/scratch/xps] directory * [http://www.geneontology.org/scratch/xps/biological_process_xp_cellular_component.obo xp obo file] * [http:...) |
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XPs defining biological processes in terms of cellular components; example: | |||
[Term] | |||
id: GO:0000054 ! ribosome export from nucleus | |||
intersection_of: GO:0051168 {namespace=biological_process_xp_cellular_component} ! nuclear export | |||
intersection_of: OBO_REL:results_in_transport_of GO:0005840 {namespace=biological_process_xp_cellular_component} ! ribosome | |||
i.e. ribosome export from nucleus = nuclear export THAT results_in_transport_of ribosome | |||
(Experimenting with the use of namespace tags as an easy way to separate out xp content from main GO) | |||
See the [http://www.geneontology.org/scratch/xps/ go/scratch/xps] directory | See the [http://www.geneontology.org/scratch/xps/ go/scratch/xps] directory | ||
| Line 5: | Line 15: | ||
* [http://www.geneontology.org/scratch/xps/biological_process_xp_cellular_component.obo xp obo file] | * [http://www.geneontology.org/scratch/xps/biological_process_xp_cellular_component.obo xp obo file] | ||
* [http://www.geneontology.org/scratch/xps/biological_process_xp_cellular_component-imports.obo imports file] - point oboedit at this | * [http://www.geneontology.org/scratch/xps/biological_process_xp_cellular_component-imports.obo imports file] - point oboedit at this | ||
This xp file has been registered in the OBO xps metadata so it is available here: | |||
* [http://www.berkeleybop.org/ontologies/#bp_xp_cellular_component downloads page] | |||
* [http://www.berkeleybop.org/ontologies/obo-all/bp_xp_cellular_component/bp_xp_cellular_component.xp.html HTML] | |||
Missing Link Report: | Missing Link Report: | ||
Revision as of 20:40, 29 April 2008
XPs defining biological processes in terms of cellular components; example:
[Term]
id: GO:0000054 ! ribosome export from nucleus
intersection_of: GO:0051168 {namespace=biological_process_xp_cellular_component} ! nuclear export
intersection_of: OBO_REL:results_in_transport_of GO:0005840 {namespace=biological_process_xp_cellular_component} ! ribosome
i.e. ribosome export from nucleus = nuclear export THAT results_in_transport_of ribosome
(Experimenting with the use of namespace tags as an easy way to separate out xp content from main GO)
See the go/scratch/xps directory
- xp obo file
- imports file - point oboedit at this
This xp file has been registered in the OBO xps metadata so it is available here:
Missing Link Report: