XP:biological process xp chebi: Difference between revisions

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Augmented by obol results from CJM
Augmented by obol results from CJM
== Synopsis ==
Logical definitions for GO Biological Process and Molecular Function using CHEBI. The current set is maintained by Mike Bada in the Hunter Group at UCDHSC
== Introduction ==
XPs defining GO terms in terms of chemical entities; example:
  [Term]
  id: GO:0000273
  name: lipoic acid metabolic process
  intersection_of: GO:0008152 ! metabolic process
  intersection_of: has_participant CHEBI:16494 ! lipoic acid
i.e. ''lipoic acid metabolic process'' =<sub>def</sub> '''metabolic process''' THAT [[has_participant]] (some) '''lipoic acid'''
Unlike the other GO cross-products, these are not housed in the [http://www.geneontology.org/scratch/xps/ go/scratch/xps] directory. The primary copy is housed on sourceforge in the [http://obo.cvs.sourceforge.net/obo/obo/ontology/cross_products/go_chebi_xp/ go_chebi_xp] directory.
This xp file has been registered in the OBO xps metadata so it is available here:
* [http://www.berkeleybop.org/ontologies/#go_xp_chebi downloads page]
* [http://www.berkeleybop.org/ontologies/obo-all/bp_xp_cell/bp_xp_cell.xp.html HTML]
Missing Link Report:


== Availability ==
== Availability ==

Revision as of 18:51, 21 May 2008

bp_xp_chebi constructed by Mike Bada of UCDHSC

Augmented by obol results from CJM

Synopsis

Logical definitions for GO Biological Process and Molecular Function using CHEBI. The current set is maintained by Mike Bada in the Hunter Group at UCDHSC

Introduction

XPs defining GO terms in terms of chemical entities; example:

 [Term]
 id: GO:0000273
 name: lipoic acid metabolic process
 intersection_of: GO:0008152 ! metabolic process
 intersection_of: has_participant CHEBI:16494 ! lipoic acid

i.e. lipoic acid metabolic process =def metabolic process THAT has_participant (some) lipoic acid

Unlike the other GO cross-products, these are not housed in the go/scratch/xps directory. The primary copy is housed on sourceforge in the go_chebi_xp directory.

This xp file has been registered in the OBO xps metadata so it is available here:

Missing Link Report:


Availability

Missing Link Report:


Tracker Items

Chebi tracker:

Presentations

From 2007