XP:biological process xp chebi: Difference between revisions
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i.e. ''lipoic acid metabolic process'' =<sub>def</sub> '''metabolic process''' THAT [[has_participant]] (some) '''lipoic acid''' | i.e. ''lipoic acid metabolic process'' =<sub>def</sub> '''metabolic process''' THAT [[has_participant]] (some) '''lipoic acid''' | ||
== Availability == | |||
Unlike the other GO cross-products, these are not housed in the [http://www.geneontology.org/scratch/xps/ go/scratch/xps] directory. The primary copy is housed on sourceforge in the [http://obo.cvs.sourceforge.net/obo/obo/ontology/cross_products/go_chebi_xp/ go_chebi_xp] directory. | Unlike the other GO cross-products, these are not housed in the [http://www.geneontology.org/scratch/xps/ go/scratch/xps] directory. The primary copy is housed on sourceforge in the [http://obo.cvs.sourceforge.net/obo/obo/ontology/cross_products/go_chebi_xp/ go_chebi_xp] directory. | ||
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* [http://www.berkeleybop.org/ontologies/#go_xp_chebi downloads page] | * [http://www.berkeleybop.org/ontologies/#go_xp_chebi downloads page] | ||
* [http://www.berkeleybop.org/ontologies/obo-all/go_xp_chebi/go_xp_chebi | * [http://www.berkeleybop.org/ontologies/obo-all/go_xp_chebi/go_xp_chebi.imports.obo imports.obo file] (point oboedit at this) | ||
* [http://www.berkeleybop.org/ontologies/obo-all/go_xp_chebi/go_xp_chebi.xp.html HTML] | * [http://www.berkeleybop.org/ontologies/obo-all/go_xp_chebi/go_xp_chebi.xp.html HTML] | ||
Revision as of 18:54, 21 May 2008
bp_xp_chebi constructed by Mike Bada of UCDHSC
Augmented by obol results from CJM
Synopsis
Logical definitions for GO Biological Process and Molecular Function using CHEBI. The current set is maintained by Mike Bada in the Hunter Group at UCDHSC
Introduction
XPs defining GO terms in terms of chemical entities; example:
[Term] id: GO:0000273 name: lipoic acid metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: has_participant CHEBI:16494 ! lipoic acid
i.e. lipoic acid metabolic process =def metabolic process THAT has_participant (some) lipoic acid
Availability
Unlike the other GO cross-products, these are not housed in the go/scratch/xps directory. The primary copy is housed on sourceforge in the go_chebi_xp directory.
This xp file has been registered in the OBO xps metadata so it is available here:
- downloads page
- imports.obo file (point oboedit at this)
- HTML
Missing Link Report:
Availability
Missing Link Report:
Tracker Items
Chebi tracker:
Presentations
From 2007