XP:biological process xp chebi: Difference between revisions
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Unlike the other GO cross-products, these are not housed in the [http://www.geneontology.org/scratch/xps/ go/scratch/xps] directory. The primary copy is housed on sourceforge in the [http://obo.cvs.sourceforge.net/obo/obo/ontology/cross_products/go_chebi_xp/ go_chebi_xp] directory. | Unlike the other GO cross-products, these are not housed in the [http://www.geneontology.org/scratch/xps/ go/scratch/xps] directory. The primary copy is housed on sourceforge in the [http://obo.cvs.sourceforge.net/obo/obo/ontology/cross_products/go_chebi_xp/ go_chebi_xp] directory. | ||
This xp file has been registered in the OBO xps metadata so it is available | This xp file has been registered in the OBO xps metadata so it is available on the [http://www.berkeleybop.org/ontologies/#logical_definitions cross-product download page]: | ||
* [http://www.berkeleybop.org/ontologies/#go_xp_chebi downloads page] | * [http://www.berkeleybop.org/ontologies/#go_xp_chebi downloads page] | ||
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* [http://www.berkeleybop.org/ontologies/obo-all/go_xp_chebi/go_xp_chebi.xp.html HTML] | * [http://www.berkeleybop.org/ontologies/obo-all/go_xp_chebi/go_xp_chebi.xp.html HTML] | ||
Missing Link Report | === Missing Link Report === | ||
== | |||
* http://www.berkeleybop.org/ontologies/obo-all/go_xp_chebi/go_xp_chebi.obo-classified-by-blip | * http://www.berkeleybop.org/ontologies/obo-all/go_xp_chebi/go_xp_chebi.obo-classified-by-blip |
Revision as of 18:55, 21 May 2008
bp_xp_chebi constructed by Mike Bada of UCDHSC
Augmented by obol results from CJM
Synopsis
Logical definitions for GO Biological Process and Molecular Function using CHEBI. The current set is maintained by Mike Bada in the Hunter Group at UCDHSC
Introduction
XPs defining GO terms in terms of chemical entities; example:
[Term] id: GO:0000273 name: lipoic acid metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: has_participant CHEBI:16494 ! lipoic acid
i.e. lipoic acid metabolic process =def metabolic process THAT has_participant (some) lipoic acid
Availability
Unlike the other GO cross-products, these are not housed in the go/scratch/xps directory. The primary copy is housed on sourceforge in the go_chebi_xp directory.
This xp file has been registered in the OBO xps metadata so it is available on the cross-product download page:
- downloads page
- imports.obo file (point oboedit at this)
- HTML
Missing Link Report
Tracker Items
Chebi tracker:
Presentations
From 2007