XP:biological process xp chebi

bp_xp_chebi constructed by Mike Bada of UCDHSC

Augmented by obol results from CJM

Synopsis

Logical definitions for GO Biological Process and Molecular Function using CHEBI. The current set is maintained by Mike Bada in the Hunter Group at UCDHSC

Introduction

XPs defining GO terms in terms of chemical entities; example:

 [Term]
 id: GO:0000273
 name: lipoic acid metabolic process
 intersection_of: GO:0008152 ! metabolic process
 intersection_of: has_participant CHEBI:16494 ! lipoic acid

i.e. lipoic acid metabolic process =_def metabolic process THAT has_participant (some) lipoic acid

Availability

Unlike the other GO cross-products, these are not housed in the go/scratch/xps directory. The primary copy is housed on sourceforge in the go_chebi_xp directory.

This xp file has been registered in the OBO xps metadata so it is available on the cross-product download page:

• downloads page
• imports.obo file (point oboedit at this)
• HTML

Missing Link Report

• http://www.berkeleybop.org/ontologies/obo-all/go_xp_chebi/go_xp_chebi.obo-classified-by-blip

NOTE: This report is out of date w.r.t the latest xps, and there are a few problems with it.. check back later

Tracker Items

Chebi tracker:

• roles and the is_a relation

Presentations

• http://www.slideshare.net/cmungall/go-chebi-xp-intro

From 2007