XP:biological process xp regulation: Difference between revisions

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(New page: There is far more detail on this page; however, some of it is historical: Regulation_cross-products)
 
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[[Regulation_cross-products]]
[[Regulation_cross-products]]
The following rule is implemented in the OE2 semantic parser:
* negative regulation of P -> biological_regulation THAT negatively_regulates P
* regulation of P -> biological_regulation THAT regulates P
* positive regulation of P -> biological_regulation THAT positively_regulates P
The [[Obol]] grammar has more complex parsing rules: [http://code.open-bio.org/svnweb/index.cgi/blipkit/view/trunk/packages/obol/src/obol_biological_process_xp_self.pro obol_molecular_function_xp_self]. See [[XP:biological_process_xp_multi_organism_process]] for example
Location:
This directory is updated NIGHTLY
* [http://www.geneontology.org/scratch/regulates_xp_live scratch/regulates_xp_live]
== Implementation ==
Short term:
convert to XPs in batch using OE2 semantic parser - editors check the above report and fix missing links
Medium term (post OE2):
Manage the XPs directly in the main .obo file
== Tracker Items ==
== See Also ==
* [[Regulation_cross-products]]
[[Category:Cross Products]]
[[Category:Regulation]]

Revision as of 20:56, 29 April 2008

There is far more detail on this page; however, some of it is historical:

Regulation_cross-products

The following rule is implemented in the OE2 semantic parser:

  • negative regulation of P -> biological_regulation THAT negatively_regulates P
  • regulation of P -> biological_regulation THAT regulates P
  • positive regulation of P -> biological_regulation THAT positively_regulates P

The Obol grammar has more complex parsing rules: obol_molecular_function_xp_self. See XP:biological_process_xp_multi_organism_process for example

Location:

This directory is updated NIGHTLY

Implementation

Short term:

convert to XPs in batch using OE2 semantic parser - editors check the above report and fix missing links

Medium term (post OE2):

Manage the XPs directly in the main .obo file

Tracker Items

See Also