XP:biological process xp regulation: Difference between revisions
Jump to navigation
Jump to search
(New page: There is far more detail on this page; however, some of it is historical: Regulation_cross-products) |
No edit summary |
||
Line 2: | Line 2: | ||
[[Regulation_cross-products]] | [[Regulation_cross-products]] | ||
The following rule is implemented in the OE2 semantic parser: | |||
* negative regulation of P -> biological_regulation THAT negatively_regulates P | |||
* regulation of P -> biological_regulation THAT regulates P | |||
* positive regulation of P -> biological_regulation THAT positively_regulates P | |||
The [[Obol]] grammar has more complex parsing rules: [http://code.open-bio.org/svnweb/index.cgi/blipkit/view/trunk/packages/obol/src/obol_biological_process_xp_self.pro obol_molecular_function_xp_self]. See [[XP:biological_process_xp_multi_organism_process]] for example | |||
Location: | |||
This directory is updated NIGHTLY | |||
* [http://www.geneontology.org/scratch/regulates_xp_live scratch/regulates_xp_live] | |||
== Implementation == | |||
Short term: | |||
convert to XPs in batch using OE2 semantic parser - editors check the above report and fix missing links | |||
Medium term (post OE2): | |||
Manage the XPs directly in the main .obo file | |||
== Tracker Items == | |||
== See Also == | |||
* [[Regulation_cross-products]] | |||
[[Category:Cross Products]] | |||
[[Category:Regulation]] |
Revision as of 20:56, 29 April 2008
There is far more detail on this page; however, some of it is historical:
The following rule is implemented in the OE2 semantic parser:
- negative regulation of P -> biological_regulation THAT negatively_regulates P
- regulation of P -> biological_regulation THAT regulates P
- positive regulation of P -> biological_regulation THAT positively_regulates P
The Obol grammar has more complex parsing rules: obol_molecular_function_xp_self. See XP:biological_process_xp_multi_organism_process for example
Location:
This directory is updated NIGHTLY
Implementation
Short term:
convert to XPs in batch using OE2 semantic parser - editors check the above report and fix missing links
Medium term (post OE2):
Manage the XPs directly in the main .obo file