XP:biological process xp regulation: Difference between revisions
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Short term: | Short term: | ||
convert to XPs in batch using OE2 semantic parser - editors check the above report and fix missing links | convert to XPs in batch using OE2 semantic parser - editors check the [http://www.geneontology.org/scratch/regulates_xp_live/go_reglive_withPosNeg_noPF-newlinks.txt above report] and fix missing links | ||
Medium term (post OE2): | Medium term (post OE2): | ||
Revision as of 11:37, 29 May 2008
There is far more detail on this page; however, some of it is historical:
The following rule is implemented in the OE2 semantic parser:
- negative regulation of P -> biological_regulation THAT negatively_regulates P
- regulation of P -> biological_regulation THAT regulates P
- positive regulation of P -> biological_regulation THAT positively_regulates P
The Obol grammar has more complex parsing rules: obol_biological_process_xp_self. See XP:biological_process_xp_multi_organism_process for example
Location:
This directory is updated NIGHTLY
See the README. In particular the newlinks report. This report will become obsolete once the regulation xps are in the main ontology.
Implementation
Short term:
convert to XPs in batch using OE2 semantic parser - editors check the above report and fix missing links
Medium term (post OE2):
Manage the XPs directly in the main .obo file