XP:cellular component xp go
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logical definitions of CC cross-product classes, in terms of BP and MF.
GO-internal XPs for CC are divided into two resources
- XP:cellular_component_xp_go - this one - CC x {BP,MF}
- XP:cellular_component_xp_self - CC x CC
These are quite different in nature; this xp file deals will what a cellular component does. The CC*CC xps deal with how components are interrelated spatially
Methods
Obol was used to generate the initial version of the file. This was then vetted by cjm.
Obol grammar: obol_cellular_component_xp prolog grammar
ontologies used
- GO (CC) - terms defined
- GO (BP+MF) - for differentia
- RO
- ro_proposed
availability
See the scratch/xps directory
The main XP file is:
You can load this in conjunction with GO.
Or you can just point oboedit at the imports file:
The XPs are also available from the OBO ontologies download matrix.
NEW: in obo browser:
Results
Relations
capable_of is used for MF and BP
Examples
[Term] id: GO:0000118 ! histone deacetylase complex intersection_of: GO:0043234 ! protein complex intersection_of: capable_of GO:0004407 ! histone deacetylase activity
[Term] id: GO:0000109 ! nucleotide-excision repair complex intersection_of: GO:0043234 ! protein complex intersection_of: capable_of GO:0006289 ! nucleotide-excision repair
Missing Links Discovered
- tracker item - 4 is_a links
- abduced links