Difference between revisions of "XP:molecular function xp cellular component"
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(New page: XPs defining molecular functions in terms of cellular components; example: <pre> [Term] id: GO:0008017 ! microtubule binding intersection_of: GO:0005488 ! binding intersection_of: OBO_REL...) |
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* [http://www.berkeleybop.org/ontologies/#molecular_function_xp_cellular_component downloads page] | * [http://www.berkeleybop.org/ontologies/#molecular_function_xp_cellular_component downloads page] | ||
* [http://www.berkeleybop.org/ontologies/obo-all/molecular_function_xp_cellular_component/bp_xp_cellular_component.xp.html HTML] | * [http://www.berkeleybop.org/ontologies/obo-all/molecular_function_xp_cellular_component/bp_xp_cellular_component.xp.html HTML] | ||
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| + | == Use Cases == | ||
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| + | A gp is annotated to '''microtubule binding''' but is not otherwise associated with the microtubule. The following rule seems reasonable | ||
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| + | * G has_function F, F results_in_binding_of C → G colocalizes_with C | ||
== Methods == | == Methods == | ||
Latest revision as of 09:24, 24 February 2009
XPs defining molecular functions in terms of cellular components; example:
[Term] id: GO:0008017 ! microtubule binding intersection_of: GO:0005488 ! binding intersection_of: OBO_REL:results_in_binding_of GO:0005874 ! microtubule [Term] id: GO:0003777 ! microtubule motor activity intersection_of: GO:0003774 ! motor activity intersection_of: OBO_REL:unfolds_in GO:0005874 ! microtubule
The moment these are mostly binding terms. See also XP:biological_process_xp_cellular_component
Availability
See the go/scratch/xps directory
- xp obo file
- imports file - point oboedit at this
This xp file has been registered in the OBO xps metadata so it is available here:
Use Cases
A gp is annotated to microtubule binding but is not otherwise associated with the microtubule. The following rule seems reasonable
- G has_function F, F results_in_binding_of C → G colocalizes_with C
Methods
An initial parse was made using Obol. The results were then manually vetted by cjm, and new xp defs manually added
