Difference between revisions of "XP:molecular function xp cellular component"

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(New page: XPs defining molecular functions in terms of cellular components; example: <pre> [Term] id: GO:0008017 ! microtubule binding intersection_of: GO:0005488 ! binding intersection_of: OBO_REL...)
 
(Availability)
 
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* [http://www.berkeleybop.org/ontologies/#molecular_function_xp_cellular_component downloads page]
 
* [http://www.berkeleybop.org/ontologies/#molecular_function_xp_cellular_component downloads page]
 
* [http://www.berkeleybop.org/ontologies/obo-all/molecular_function_xp_cellular_component/bp_xp_cellular_component.xp.html HTML]
 
* [http://www.berkeleybop.org/ontologies/obo-all/molecular_function_xp_cellular_component/bp_xp_cellular_component.xp.html HTML]
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== Use Cases ==
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A gp is annotated to '''microtubule binding''' but is not otherwise associated with the microtubule. The following rule seems reasonable
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* G has_function F, F results_in_binding_of C &rarr; G colocalizes_with C
  
 
== Methods ==
 
== Methods ==

Latest revision as of 09:24, 24 February 2009

XPs defining molecular functions in terms of cellular components; example:

[Term]
id: GO:0008017 ! microtubule binding
intersection_of: GO:0005488 ! binding
intersection_of: OBO_REL:results_in_binding_of GO:0005874 ! microtubule

[Term]
id: GO:0003777 ! microtubule motor activity
intersection_of: GO:0003774 ! motor activity
intersection_of: OBO_REL:unfolds_in GO:0005874 ! microtubule

The moment these are mostly binding terms. See also XP:biological_process_xp_cellular_component

Availability

See the go/scratch/xps directory

This xp file has been registered in the OBO xps metadata so it is available here:

Use Cases

A gp is annotated to microtubule binding but is not otherwise associated with the microtubule. The following rule seems reasonable

  • G has_function F, F results_in_binding_of C → G colocalizes_with C

Methods

An initial parse was made using Obol. The results were then manually vetted by cjm, and new xp defs manually added

X binding

Results

Missing Parentage Reports