10 April 2024 PAINT Conference Call

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Present

Marc, Pascale, Huaiyu, Dustin, Paul T.

Agenda

"Do not annotate" terms

Anushya gathered all the IBDs and the families that will be impacted if these annotations are removed.

New PAINT release

This version contains a GUI update so that curators can detect horizontal transfer nodes easily. The fill color of horizontal transfer nodes is now white. Clades where horizontal transfer occurs can also be detected easily using Tree->Color tree->color based on horizontal transfer.

Functionome paper revision

The review is back. The comments are summarized at https://docs.google.com/document/d/1LCTr2LNwg7hLhyOYaTKtonWDxdcJyjWLtFbK0FKUGpA/edit. We should discuss how to respond.

GO meeting presentation

  • Are we going to present?
  • If so, what topic?

Val's TreeGrafter issues

71 open tickets... https://github.com/geneontology/go-annotation/issues?q=is%3Aissue+is%3Aopen+TreeGrafter