10 Jan 2024 PAINT Conference Call
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Present
Marc, Dustin, Anushya, Huaiyu, Paul T., Pascale
Agenda
GitHub Tickets
- "GOREF" vs. "GO_REF" in IBA reference column - https://github.com/geneontology/go-site/issues/2185#issuecomment-1869045297
- "GOREF" is a typo. Should be "GO_REF" and needs to be fixed in both createGAF.pl script and ontobio QC IBA GORULE:0000037 test code.
- Species vs. strain taxon ID for S. pombe - https://github.com/geneontology/helpdesk/issues/468
Update on automatic replacement of obsoleted GO terms in PAINT annotations
- All the missing replacement GO terms have been added back to the PAINT annotations by Anushya's validation program.
- Dustin will regenerate the stats.
- Total IBA annotation change: +1.53% (+58,588 annotations) - report
- Missing human IBA diff - updated 20240108
PAINT paper
We are going to focus our discussion on the new draft of human functionome paper. Here is the link to the draft. https://docs.google.com/document/d/1UHaO-ti3WN7r4zcbZnyRyMYUEhJh-d5NqljTktzLQyg/edit?usp=sharing
We will discuss new data that can possibly address reviewers' concerns. Huaiyu circulated some of them. We can discuss about them.
Test website based on UPL15 for viewing Full GO IBA/IEA annotations can be accessed via https://go.paint-dev.usc.edu