Annotation Conf. Call 2021-02-02

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Agenda and Minutes

GAF 2.2

  • Discussion of where each group is at, any remaining issues to address
  • AI: Discuss with Seth use of new relations in GPAD 1.2 as a way of moving us forward with GAF 2.2 more efficiently
    • As soon as the February release is done (it's underway), the pipeline will switch over to consuming and generating the GAF2.2 files
    • Relations from GAF2.2 will be included in GPAD1.2, so groups like UniProt who consume PAINT GPAD1.2 from GO can get the new relations there
  • AI: Questions for Seth - testing GAF 2.2 files; groups have put test files in the GAF 2.2 testing github ticket
    • Testing will commence once the February release is done
  • AI: Managers call: will discuss options and priorities for starting the official March release early so we can get it out the door as close to March 1st as possible

GOC Meetings

  • Virtual Consortium Meeting -Monday May 3rd -Thurs May 6th
    • Agenda/Minutes - please suggest topics for discussion and/or breakout groups
  • Next week (week of February 8th) is a no GO meetings week, but there will be an Ontology Editors Jamboree!
    • If you have ontology tickets that you'd like to see addressed, please let Pascale know

Other issues

  • Malcolm raised the issue of formatting for Xenbase gene identifiers in the table for browsing GO-CAMs on the GO site
  • Ticket:
    • Jim and Laurent-Philippe looking into this
  • Snapshot releases are up and running again after brief outage last week
  • NEO pipeline - on hold until we can fix an issue with the RGD GAF that is linking two different species to one entity


  • On call: Bob, Christina, David, Debby, Dmitry, Dustin, Edith, Giulia, Helen, Karen, Kimberly, Li, Malcolm, Midori, Patrick, Pascale, Rob, Ruth, Sabrina, Seth, Stacia, Suzi, Tanya