Annotation Conf. Call 2021-03-16

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Agenda and Minutes

GOC Meetings, Other Announcements

May Consortium Meeting

  • Virtual Consortium Meeting -Tuesday May 4th - Friday May 7th (note shift forward by one day)
    • Agenda/Minutes - please suggest topics for discussion and/or breakout groups

GO-CAM Office Hours

2nd Full Week of Month - no GO calls

Noctua Outages

  • April, weekends of 9th and 23rd
    • Planned LBL outages

GAF 2.2

  • The pipeline has now switched over to consuming and generating GAF2.2 files for snapshot releases
    • Last version of snapshot ran on Sunday, March 14th
  • Implemented two new GO rules (59 and 61) wrt transitioning to GAF2.2
  • Determine where each group is at wrt the GAF source file they provide to GO, any remaining issues to address
    • As of 2021-03-16:
      • dictyBase - GAF2.2
      • FlyBase - GAF2.2
      • MGI - GAF2.2
      • PAINT - GAF2.2
      • PomBase - GAF2.2
      • Reactome - GAF2.2 is coming
      • RGD - GAF2.2
      • SGD - GAF2.2
      • TAIR - GAF2.2 is coming
      • UniProt GOA - GAF2.2
      • WB - GAF2.2
      • Xenbase - still working on process for getting full GAF2.2 file for GOC; have stub GAF2.2 file with everything from GOA
      • ZFIN - GAF2.2
  • Noctua-derived GPAD files will also be subject to GO rules so we can repair existing CC relations
    • Will work next update Noctua form and existing annotations
  • Report any issues on github ticket


  • Use Slack as a communication tool for GOC
  • Organized into "channels"
  • When to use Slack vs github

Ontology Editors Jamboree


  • On call: Birgit, Colin, David, Debby, Dmitry, Dustin, Edith, Gene, Giulia, Harold, Helen, Judy, Karen, Kimberly, Li, Malcolm, Midori, Pascale, Petra, Raymond, Rob, Sabrina, Seth, Stacia, Suzi, Tanya