Annotation Conf. Call 2021-07-20

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Agenda and Minutes

Meetings and Announcements

October Consortium Meeting

  • Wednesday, October 13th - Friday, October 15th
  • Hosted by:
    • University of Maryland Medical School, Baltimore MD
    • Michelle Gwinn-Giglio
  • Agenda


Planned outages

  • CANCELLED - Friday, July 23rd, (2PM - 8PM EDT) for LBL maintenance
  • Will perform an update instead on Thursday, July 22nd from 4 - 5:30pm PDT
  • Please always remember to save your work!
    • Illustration of Noctua landing page for checking status
    • Reminder that clicking on a 'Create model' button will create a new model id, even if empty

Updating ORCID URLs

  • GOC is transitioning from http to https throughout our system for ORCID URLs
  • users.yaml file has been update
    • Please only use https for orcids going forward
  • Still need to update the Noctua GO-CAM models
    • Doing this first noctua-dev
    • Landing page will show orcids for non-https contributors until models get updated

GO-CAM Office Hours

  • Tuesday, July 27th at 8am PDT
  • Please add agenda items if you have models you'd like to share and discuss

Annotation Issues

Ontology ticket - response to paclitaxel

  • The usefulness of 'response to' terms is GO has been an ongoing issue
  • Discussion on the 'response to paclitaxel' ontology ticket is important for annotators to consider
  • Not proposing a wholesale review of 'response to' terms at this point, but if we can start moving towards a consensus on how we use these terms in GO, we may be able to start cleaning up this area of the ontology
  • Karen will respond on the ticket wrt the fate of drug, xenobiotic, chemical classification terms in GO
  • Will likely revisit these types of terms/annotations in the future

Upgrading 'exists during' annotation extensions

Annotation Review

  • Can use remaining time on this call for work on any outstanding tickets


  • On call: Chris, David, Dmitry, Dustin, Giulia, Helen, Karen, Kimberly, Li, Malcolm, Midori, Penelope, Petra, Raymond, Ruth, Seth, Sierra, Sridhar, Val