Annotation Conf. Call 2022-03-15

Agenda and Minutes

Meetings and Announcements

Spring 2022 Consortium Meeting

• Virtual
• Tuesday April 26th to Thursday April 28th, from 7AM-11AM Pacific (4PM-8PM Europe)
• Please email Pascale if you have topics for the agenda
  • On the agenda: Continue goslim_generic discussion: review MF and CC slims, also, a session using the matrix to check redundancy in the goslim classes. Bring your gene sets!

Noctua

• Regularly scheduled Noctua outage:
  • Thursday, March 24th

Wiki Freeze and Migration

• The GOC wiki will be migrating to a new provider
• This requires a freeze on editing
• Wiki will be frozen for editing starting early Monday, the 21st and continuing through Tuesday, the 22nd
• All goes well, we'll be back in business later next week
• Thank you, Seth!

GO Release Pipeline

• Last GO release was: Thu Jan 13 15:32:15 PST 2022 - there should be a release in the next days
• A number of issues have arisen since to delay the next release
  • Some upstream files have not been available
  • Issues with some IC annotations not having a With/From value
    • More granular evidence codes (biological system reconstruction) used by ComplexPortal map up to IC in ECO but don't yet have a value in With/From
    • GO-RULE:0000016 is now a WARNING rather than a filter
  • Other technical issues

AmiGO

• Update to default closure -> 'is a' and 'part of' with users opting in to 'regulates'
• Coming with the next successful release?

Ontology

• BP refactor: removing single step processes - initial list (of 800 terms): https://drive.google.com/drive/folders/1_6fkrV7Ed2NFBx_EAzIpULov3DBhaDx1

Annotation

• Ongoing annotation review ticket (132 open tickets)
  • How to find annotation review tickets assigned to you:
    • In filters box:
      • is:issue
      • is:open
      • label:"annotation review"
      • assignee:"your github handle"
    • Or, a shortcut:
      • Click on any open ticket with the "annotation review" label
      • In the filters box, add assignee:"your github handle"
• Reminder to check annotation reports generated by the GO pipeline

Other Projects

• MGI nearing completion of Noctua import (all manual MGI annotations)

Attendees

• On call: Antonia, Chris, David, Deborah, Dmitry, Edith, Harold, Karen, Kimberly, Malcolm, Mary, Pascale, Petra, Rahi, Raymond, Rob, Seth, Sridhar, Stacia, Suzi