Annotation Conf. Call 2022-04-05

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Agenda and Minutes

Meetings and Announcements

No GO Calls Week - Next Week

Spring 2022 Consortium Meeting

  • Virtual
  • Tuesday April 26th to Thursday April 28th, from 7AM-11AM Pacific (4PM-8PM Europe)
  • Participants need to register with EventBrite
  • Please email Pascale if you have topics for the agenda
    • On the agenda: Continue goslim_generic discussion: review MF and CC slims, also, a session using the matrix to check redundancy in the goslim classes. Bring your gene sets!


  • Regularly scheduled Noctua outage:
    • Thursday, April 14th
    • Plan to implement obsolete term updates across existing models when there is a 'replaced by' value in the relevant ontology

Wiki Migration

  • The GOC wiki migration is complete
  • Thank you, Seth!

Google Drive Migration

  • GO has set up a new Google drive to consolidate everything under a group ownership
  • Document owners in the current LEGACY Gene Ontology drive (look in Shared with me) have been systematically moving their documents to the appropriate location in the new Gene Ontology drive (look in shared drive)
    • LEGACY Gene Ontology -> People -> select account -> Is owned by

GO Release Pipeline

  • April release started?


  • Default closure is now 'is a' AND 'part of'
  • Regulates closure is now opt-in


  • Jamboree this week on reviewing and obsoleting single-step BPs
  • Proposal for updating membrane CC terms


  • Please remember to keep checking the reports generated by the pipeline and address any errors
  • Also check annotation review tickets assigned to you/your group in go-annotation repo on github
  • Questions about either - please bring to the meeting

GO-CAM and Noctua

  • Congratulations to MGI and the GO software group for a successful migration of manual mouse annotations to Noctua
    • Next up for MGI: migrating their non-mouse annotations to Noctua
  • Next groups: SGD and WB
  • At consortium meeting:
    • Demonstration of new visual pathway editor
    • Discussion of GO-CAM Guidelines: proposal for annotating signaling receptor activities?

Other Projects


  • On call: Chris, David, Deborah, Dmitry, Dustin, Edith, Giulia, Harold, Helen, Karen, Kimberly, Li, Malcolm, Mary, Pascale, Petra, Raymond, Rob, Seth, Sridhar, Stacia, Suzi