Annotation Conf. Call 2022-04-19

From GO Wiki
Jump to navigation Jump to search

Agenda and Minutes

Meetings and Announcements

Spring 2022 Consortium Meeting

  • Virtual
  • Tuesday April 26th to Thursday April 28th, from 7AM-11AM Pacific (4PM-8PM Europe)
  • Participants need to register with EventBrite
  • Please email Pascale if you have topics for the agenda
    • On the agenda: Continue goslim_generic discussion: review MF and CC slims, also, a session using the matrix to check redundancy in the goslim classes. Bring your gene sets!


  • Regularly scheduled Noctua outage:
    • Thursday, April 28th

Google Drive Migration

  • GO has set up a new Google drive to consolidate everything under a group ownership
  • Document owners in the current LEGACY Gene Ontology drive (look in Shared with me) have been systematically moving their documents to the appropriate location in the new Gene Ontology drive (look in shared drive)
    • LEGACY Gene Ontology -> People -> select account -> Is owned by

GO Release Pipeline

  • April release?




  • Please remember to keep checking the reports generated by the pipeline and address any errors
    • Are we ever going to fix report 28?
      • Dustin will look into this; make a ticket, if needed
    • Check rule that requires With/From to be from the same species - this could just be a warning, for now
      • Harold's self-binding example
    • AI: Check interactor documentation wrt With/From vs 'has input' extensions and update it and rules, as needed
  • Also check annotation review tickets assigned to you/your group in go-annotation repo on github
  • Questions about either - please bring to the meeting

GO-CAM and Noctua

  • Automatic ontology updates implemented last Thursday (April 14th)
  • NEO (annotatable entities) updated to include more UniProtKB entities (reviewed Swiss-Prot)
  • At consortium meeting:
    • Demonstration of new visual pathway editor
    • Discussion of GO-CAM Guidelines: proposal for annotating signaling receptor activities?

Other Projects


  • On call: Antonia, Chris, Colin, David, Deborah, Dustin, Edith, Harold, Helen, Jodi, Karen, Kimberly, Leonore, Li, Malcolm, Mary, Pascale, Petra, Rahi, Raymond, Rob, Seth, Sridhar, Stacia, Suzi