Annotation Conf. Call 2022-05-02
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Agenda and Minutes
Meetings and Announcements
Spring 2022 Consortium Meeting
- Follow-up survey - please see Suzi's email
- Other feedback?
Fall 2022 Consortium Meeting
- Possible in-person meeting; still being discussed
Noctua
- Regularly scheduled Noctua outage:
- Thursday, May 12th
- Automatic ontology updates implemented on Thursday, April 14th
- April 28th Noctua systems outage - we did not do the ontology updates due to an issue with upstream ontologies that would have resulted in an EMAPA term being automatically replaced by an UBERON term
- Jim will institute a check for this in the Noctua ontologies build
GO Release Pipeline
- April release?
- From Slack #release-pipeline: ontology build failure
- May be fixed already - https://github.com/geneontology/go-ontology/issues/23248
- Any other issues?
AmiGO
Ontology
Annotation
- Please remember to keep checking the reports generated by the pipeline and address any errors
- Are we ever going to fix report 28?
- Dustin will look into this; GH ticket: https://github.com/geneontology/pipeline/issues/280 (Closed, should be fixed in pipeline now)
- Check rule that requires With/From to be from the same species - this could just be a warning, for now
- Harold's self-binding example
- AI: Check interactor documentation wrt With/From vs 'has input' extensions and update it and rules, as needed
- Are we ever going to fix report 28?
- Also check annotation review tickets assigned to you/your group in go-annotation repo on github
- Questions about either - please bring to the meeting
GO-CAM and Noctua
- Visual pathway editor - any additional feedback?
- Discussion of GO-CAM Guidelines: proposal for annotating signaling receptor activities
Other Projects
Attendees
- On call: Colin, Deborah, Dustin, Edith, Harold, Karen, Kimberly, Leonore, Malcolm, Pascale, Patrick, Rahi, Raymond, Rob, Seth, Sierra, Stacia, Suzi, Petra