Annotation Conf. Call 2022-07-19

Agenda and Minutes

Meetings and Announcements

Fall 2022 Consortium Meeting

• In person with remote accommodation
• At Caltech, Pasadena, CA, Tuesday, October 11th - Thursday, October 13th

Noctua

• Regularly scheduled Noctua outage:
  • Thursday, July 28th

Annotation Call Schedule

• Meet July 26th
• No meeting August 2nd
• No meeting August 9th

Google Drive Migration

• Please check the old GO drive for files you own
• Move the files to the new shared drive by the end of the week
• Don't need to move folders
• Unmoved files will be bulk copied over (but this will break links between files)

GO Release Pipeline

• July release is out
• Some issues with snapshot releases
  • Could not rebuild NEO (Noctua Entity Ontology) last Thursday

Ontology

Membrane CC Terms

• Proposal to obsolete and reorganize CC ontology for membrane annotations
  • Capturing membrane protein topology will no longer be under the purview of GO annotation
  • Some ontology work left to do, but curators are still encouraged to look at the spreadsheet to make sure they understand what will happen to the annotations
    • Review 'integral to membrane protein annotations'
    • SOP for examining topology and GO CC annotations in UniProtKB
• What about GO:0009897 external side of plasma membrane ?
  • Def: The leaflet of the plasma membrane that faces away from the cytoplasm and any proteins embedded or anchored in it or attached to its surface.
  • Will keep this term.

Coming: Review of Histone-related Processes and Functions

• Next week

Annotation

Annotation error reports and annotation review

• Please remember to keep checking the reports generated by the pipeline and address any errors
• Also check annotation review tickets assigned to you/your group in go-annotation repo on github
• Questions about either - please bring to the meeting

GO-CAM and Noctua

• Software updates
  • Model copy functionality now on production

Attendees

• On call: David, Dmitry, Dustin, Edith, Giulia, Karen, Kimberly, Leonore, Mahima, Mary, Pascale, Raymond, Rob, Seth, Suzi, Debby