Annotation Guidelines
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This is the new Annotation Guidelines page (to be completed & reviewed)
New proposed index page: https://docs.google.com/document/d/1UlAsmGOrEbpOaKlCApzdbvt48D_EMgA5gho5ptfTSvE/edit#
1. PROPOSAL TO REPLACE https://wiki.geneontology.org/Noctua#Noctua_Users_Manual
Noctua GO-CAM Editors
Noctua has four curation interfaces: 1) the Noctua Visual Editor, 2) the Noctua Form, 3) the Noctua Graph Editor, and the Annotation Review Tool.
- The Noctua Visual Editor (VPE) is designed for curating GO-CAM models, i.e. models that include at least two activities/MFs linked by causal relations.
- The Noctua Form is a structured annotation form that is recommended for creating 'standard' GO annotations.
- The Noctua Graph Editor is best suited for linking standard annotations together to create a causal model (GO-CAM).
- The Annotation Review tool
| Getting started | ||
|---|---|---|
| Topic | Status | Last reviewed |
| Noctua Landing Page | Draft | |
| Browsing and searching annotations and models | Draft | |
| Login | Current | 2022-05-13 |
| Getting started | ||
| Topic | Status | Last reviewed |
| Noctua Visual Editor (VPE) | Current | 2022-05-05 |
| Noctua Form | Draft | |
| Noctua Graph Editor | Draft | |
| Annotation Review Tool | Current | 2021-05-26 |
| Form Editor | Molecular Function | |
|---|---|---|
| Biological Process | ||
| Cellular Component | ||
| Graph Editor | Molecular Function | |
| Biological Process | ||
| Cellular Component | ||
| Adding contextual information (annotation extensions) | ||
| Form Editor | Molecular Function | |
| Biological Process | ||
| Cellular Component | ||
| Graph Editor | Molecular Function | |
| Biological Process | ||
| Cellular Component | ||
| Editing annotations | ||
| Form Editor | ||
| Graph Editor | ||
| Creating GO-CAMs | ||
| Creating an activity unit | Form Editor | |
| Graph Editor | ||
| Linking Activities | Form Editor | |
| Graph Editor | ||
| Model metadata | ||
| Model titles | General Guidelines | |
| Form Editor | ||
| Graph Editor | ||
| Releasing models to production | Form Editor Form Editor] | |
| Graph Editor | ||
| Other tips and tricks | Adding a NOT qualifier to an annotation | |
| Importing existing annotations | ||
| Changing annotation group | ||
| Model validation | ||
| Running the reasoner | ||
| Viewing GPAD export] | ||
| Using templates | ||
Review Status
Draft: 2021-02-28 Patrick Masson, Pascale Gaudet