Annotation usage examples for each annotation extension relation

From GO Wiki
Jump to navigation Jump to search 
 UNDER REVIEW

GO relationships OBO file (GOREL)

Back to Annotation Extension

Information on Folding and Unfolding

Annotation extension QuickGO graph [1]


In the list below the term available in the Annotation extension QuickGO graph ('AE graph') are compared to the term listed in RO 'Align' means these have the same parents if the AE graph parent is listed then this means there is a difference between the RO term and the AE graph


Relations

acts on population of

causally upstream of - align, although in AE graph the parent for this term is 'root node'

exists during - not in RO: in AE graph the parent for this term is 'root node'

happens during

occurs_in

part_of

has small molecular inhibitor

has small molecular activator

results in formation_of

results_in_acquisition_of_features_of - in both but in AE graph the parent for this term is 'has_participant'; in RO there are other parent terms, although does have 'has participant' as a grandparent

results_in_development_of - in both RO and AE graph, however in RO there are additional parents, in AE graph the parent for this term is 'has_participant'

results_in_movement_of - in both RO and AE graph, however in RO there one additional parent, although does have 'has participant' as a grandparent, in AE graph the parent for this term is 'has_participant'

results_in_morphogenesis_of - in both RO and AE graph, however in RO there are additional parents, in AE graph the parent is 'has_participant'

results_in_maturation_of - in both but in AE graph the parent for this term is 'has_participant'; in RO there are other parent terms, although does have 'has participant' as a grandparent

results_in_commitment_to - in both RO and AE graph, however in RO there are additional parents, in AE graph the parent is the 'root node'

results_in_determination_of - in both RO and AE graph, however in RO there are additional parents, in AE graph the parent is the 'root node'

results_in_specification_of - in both RO and AE graph, however in RO there are additional parents, in AE graph the parent is the 'root node'

results_in_division_of - not in RO: in AE graph the parent for this term is 'has_participant'

Relations in Protein2GO graph not in the lists above

produced_by

adjacent_to

coincident_with

has_target_end_location

has_target_start_location

regulates

  • negatively_regulates
  • positively_regulates
  • directly_regulates
    • directly_negatively_regulates
    • directly_positively_regulates
Retrieved from "https://wiki.geneontology.org/index.php?title=Annotation_usage_examples_for_each_annotation_extension_relation&oldid=86573"