Aug2010 ontology report
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Ontology Development Report - August 2010
I. Ontology Development
Tracker
- Items opened: 102
- Items closed: 88
- Items still open: 325
- assigned: 231
- unassigned: 94
Completed items
- Kidney development: mesonephros terms are done [David and Yasmin]
- BPxBP (BP involved_in BP) clean-up for parsing is done [David and Tanya]
- Resolved issues regarding cognition and sensory processing [David and Tanya]
- TermGenie up and running. Commits going in on a regular basis. Can request terms for regulation of existing MF and BP terms. [Chris, Seth, David, Jane, Tanya]
- Various SourceForge items [all]
Content items in progress
- Lots of enzyme-related stuff; added various new terms, filled in missing defs or EC / other xrefs for some undefined or poorly defined terms [Amelia]
- First commit of the transcription overhaul was made. [Karen and David]
- Started submitting missing GOCHE terms to CHEBI [Jane]
- Quality control continues as usual - reports generated by Chris (cronjobs)
- Abduced links [[1]][David, Tanya]
Publications
- GOCHE paper draft is up and being circulated [David, Chris, Tanya, Jane, Harold, Midori and others]
- Heart development paper is in the draft stage [David, Varsha]
- Case studies for publication on "revisability" of GO, proposed and coordinated by Sabina Leonelli - submitted to BMC Bioinformatics [Midori, Jane, Alex, Karen C]