Aug2010 ontology report

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Ontology Development Report - August 2010

I. Ontology Development


  • Items opened: 102
  • Items closed: 88
  • Items still open: 325
    • assigned: 231
    • unassigned: 94

Completed items

  • Kidney development: mesonephros terms are done [David and Yasmin]
  • BPxBP (BP involved_in BP) clean-up for parsing is done [David and Tanya]
  • Resolved issues regarding cognition and sensory processing [David and Tanya]
  • TermGenie up and running. Commits going in on a regular basis. Can request terms for regulation of existing MF and BP terms. [Chris, Seth, David, Jane, Tanya]
  • Various SourceForge items [all]

Content items in progress

  • Lots of enzyme-related stuff; added various new terms, filled in missing defs or EC / other xrefs for some undefined or poorly defined terms [Amelia]
  • First commit of the transcription overhaul was made. [Karen and David]
  • Started submitting missing GOCHE terms to CHEBI [Jane]
  • Quality control continues as usual - reports generated by Chris (cronjobs)
    • Abduced links [[1]][David, Tanya]


  • GOCHE paper draft is up and being circulated [David, Chris, Tanya, Jane, Harold, Midori and others]
  • Heart development paper is in the draft stage [David, Varsha]
  • Case studies for publication on "revisability" of GO, proposed and coordinated by Sabina Leonelli - submitted to BMC Bioinformatics [Midori, Jane, Alex, Karen C]

Anything else

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