Dec2008 ontology report
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Ontology Development & GO Editorial Office Report - December 2008
I. Ontology Development
- SourceForge
- Items opened: 79
- Items closed: 74
- GO Eds: 37
- MOD curators: 27 (details in Appendix 1)
- GO Ed/MOD collaborations: 10 (details in Appendix 2)
- Items still open: 260
- assigned, GO Eds: 77
- assigned, MOD curators: 92
- unassigned: 91
- Content items resolved
- Several SourceForge items resolved
- Content items in progress
- Considerable work on cross-products within GO -- see Category:Internal_Cross_Products and Editors_cross-product_implementation_plan (David, Midori, Jane, Jen, Chris)
- Work on virus-related terms continuing (Jane, Michelle, Candace, Ariane Toussaint, Brenley McIntosh)
- Continuing work on processes affecting cellular components (Jane, David, Midori, Val, et al.)
- Signal transduction overhaul continuing; planning content meeting in February or March; latest notes at Signaling_Meeting_Minutes_April_2008_- (Jen, David)
- Function-process links for electron transport, metabolic pathways (Jen, Harold, et al.; for electron transport see Electron_transport_mf-bp_Sept_2007_onwards.)
- Quality control reports generated by Chris
- Regulation (David, Tanya)
- Multiple part_of parents (several GO curators, especially Tanya & David)
- Various SourceForge items
- Ontology development report for grant done
See monthly report in CVS for ontology statistics.
II. GO Editorial Office activities not represented in part I
- Amelia at Berkeley
- OBO-Edit working group:
- OBO-Edit 2 testing -- testing task list for 2.0 release available, and most tasks claimed
- Discussions about handling disjoint relations is OBO-Edit's editor and viewer components
- Graphviz viewer bug fix; graph editor configuration options (Jen)
- Advocacy/outreach
- Progress report for grant done
- Usual gohelp traffic
- Meetings
- OntoGenesis Meeting Seven: Building an Ontology with Collaborative Protege, EBI, Dec. 15-16 (Jen)
- Discussions with Protege developer on Protege/OBO-Edit compatibility, loading GO, etc.
- OntoGenesis Meeting Seven: Building an Ontology with Collaborative Protege, EBI, Dec. 15-16 (Jen)
- Anything else
- Developing teaching materials for a Java programming course to be run at the EBI in January (continued; Jen, with EBI programmers and training staff)
- GO bibliography has 2454 entries
Appendix 1: MOD curators' SF items 1909719 David 1979289 Tanya & David 1988770 Tanya & David 2191580 Tanya & David 2193780 David 2318298 Tanya & David 2339484 Tanya & David 2353161 Tanya & David 2353632 Tanya & David 2356130 David 2356187 Tanya & David 2356404 Tanya & David 2366108 Tanya & David 2371020 Tanya & David 2390981 Donghui 2390994 Donghui 2391052 Doug, David, Tanya 2392308 Tanya & David 2392599 Tanya & David 2392966 David 2393094 Karen C 2393141 Tanya & David 2431412 Tanya & David 2434262 Tanya & David 2444895 Tanya & David 2445344 Tanya & David 2449166 Tanya & David Appendix 2: GO Ed-MOD collaboration SF items - MOD curator(s) involved 2208429 Julie, Eurie 2323171 Pascale, Donghui, Eurie 2354293 Tanya & David 2382978 Alex 2393344 Maria, Peter 2406544 Tanya & David 2431695 Karen C, Harold 2435061 Val, Rama 2435063 Val, Rama 2435141 Rama (Note: "MOD curator" is shorthand for any non-GO-Ed curator)