Feb2008 ontology report
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Ontology Development & GO Editorial Office Report - February 2008
I. Ontology Development
- SourceForge
- Items opened: 74
- Items closed: 85
- GO Eds: 42
- MOD curators: 18 (details in Appendix 1)
- GO Ed/MOD collaborations: 25 (details in Appendix 2)
- Items still open: 273
- assigned, GO Eds: 62
- assigned, MOD curators: 53
- unassigned: 158
- Content items resolved
- Disjoint violations corrected
- Improvements for regulation terms (see below)
- Several SourceForge items resolved
- Content items in progress
- David and Tanya have continued to clean up errors reported by Chris' QC script. The 'regulates' relationship itself is still on target for March 25th (http://wiki.geneontology.org/index.php/Regulation_Main_Page).
- Midori and David have tackled the last of the disjoint violations with the help of Alex on the 'response to stimulus terms'.
- Sporulation terms, aka the last of the sensu revamp (http://wiki.geneontology.org/index.php/Sporulation_Meeting_Notes)
- Electron transport working group active (http://wiki.geneontology.org/index.php/Electron_transport)
- Noting function-process links
- Lipoprotein-related process and component terms - small collaboration with UCL and Reactome
- Signal transduction overhaul just beginning -- Jen identifying experts and specific target areas
- Various SourceForge items
See monthly report in CVS for ontology statistics.
II. GO Editorial Office activities not represented in part I
- Jane on maternity leave
- OBO-Edit working group:
- More bug testing and documentation for OBO-Edit 2.0
- Advocacy/outreach
- Further discussions on grape genome annotation
- Jen has attended a course on "Training the Trainer" at EBI
- Jen presented a "module" on GO at an EBI Roadshow in Ghent
- February newsletter published
- Anything else
- Wikis merged (Jen, Gail Binkley)
- GO bibliography has 1824 entries
Appendix 1: MOD curators' SF items 1654293 Tanya, David 1698954 Tanya, David 1702910 Tanya, David, Rama 1718894 David 1843533 Donghui 1868490 Tanya, David 1873337 Donghui 1880933 Tanya, David, Jodi 1881185 Tanya, David, Val 1881546 Eurie, Rama 1882605 Tanya, David 1882936 Tanya, David 1884739 Donghui 1891386 Tanya, David 1891600 David 1892011 Tanya, David 1892146 Tanya, David 1899471 David Appendix 2: GO Ed-MOD collaboration SF items - MOD curator(s) involved 900455 Tanya, David 1009912 David, Alex 1449136 Tanya, David, Karen C 1643538 Tanya, David 1677520 Chris 1689338 David 1744127 Tanya, David 1758875 Eurie, Val 1830483 David, Val 1863992 Tanya, David 1873999 many curators, especially Alex, Val 1878307 Val, Maria 1881132 Val, Maria, Karen C 1883840 Alex 1886525 Julie, Karen C 1886527 Karen C 1886702 Karen C 1887904 Alex 1891383 Val 1892286 Karen C 1893192 Alex, Rama 1894995 Alex, Peter 1896029 Maria, Val 1896201 Peter 1900056 Peter, Pascale, Karen C (Note: "MOD curator" is shorthand for any non-GO-Ed curator)