Jul2008 ontology report
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Ontology Development & GO Editorial Office Report - July 2008
I. Ontology Development
- SourceForge
- Items opened: 106
- Items closed: 80
- GO Eds: 50
- MOD curators: 15 (details in Appendix 1)
- GO Ed/MOD collaborations: 15 (details in Appendix 2)
- Items still open: 268
- assigned, GO Eds: 80
- assigned, MOD curators: 107
- unassigned: 81
- Content items resolved
- Several SourceForge items resolved
- Content items in progress
- New additions for (Jane, with PAMGO curators)
- Processes affecting cellular components - meeting July 9, with follow-up work planned (Jane, David, Midori, Val, et al.)
- More progress on peptidase MF terms, with planned obsoletions announced (Midori, Colin, Peter, Ben, Darren Natale, MEROPS)
- Considerable progress on taxon links, including timeline, editing pipeline, scripts, and some content (Jen, Chris, others ad hoc)
- Several things continuing as reported in May and June.
- Signal transduction overhaul continuing; latest notes at Signaling_Meeting_Minutes_April_2008_- (Jen, David)
- Drug transport (part of latest round of transport work|Steve_Oliver%27s_Transport_Group#3rd_June.2C_2008) (Jen, with Paul Dobson)
- Regulates relationships for multi-organism processes (Jane)
- Function-process links for electron transport, metabolic pathways (Jen, Harold, et al.)
- Various SourceForge items
See monthly report in CVS for ontology statistics.
II. GO Editorial Office activities not represented in part I
- Amelia at Berkeley
- OBO-Edit working group:
- OBO-Edit 2 testing continues; considerable progress on documentation
- Jen doing further work on the GraphViz viewer (now mainly configuration and obomerge GUI
- Advocacy/outreach
- Usual gohelp traffic
- Publications
- Updated version of Current Protocols in Bioinformatics article in press (Judy, Midori)
- Meetings
- OBO Foundry meeting July 7-8 (Jane)
- High Throughput Cell Based Screening Workshop, July 17-18 (Midori)
- Anything else
- GO bibliography has 2049 entries
Appendix 1: MOD curators' SF items 1482309 David 1605697 David 1913922 David 1962458 Tanya, David, Karen C 1963303 David, Tanya 1968595 David 1970310 David 1986941 Donghui 1990703 David, Tanya 1992453 David, Tanya 1998647 David, Tanya 2013889 Donghui 2015913 David 2023438 David 2023442 David, Tanya Appendix 2: GO Ed-MOD collaboration SF items - MOD curator(s) involved 1729553 Rama 1778552 Val, Rama, Karen C 1900079 Rama, Karen C, Maria 1995003 David, Val 2006931 Kimberly, Gary Schindlema 2008569 Chris 2014185 Peter 2016121 Chris, David 2016180 Ruth 2016244 Peter 2020664 Karen C, Val 2020863 Karen 2023698 Peter 2024659 Val 2032612 Karen C (Note: "MOD curator" is shorthand for any non-GO-Ed curator)