Jul2009 ontology report

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Ontology Development & GO Editorial Office Report - July 2009

I. Ontology Development

  • SourceForge
    • Items opened: 86
    • Items closed: 68 (3 duplicates deleted)
    • Items still open: 257
      • assigned, GO Eds: 92
      • assigned, MOD curators: 115
      • unassigned: 50
  • Content items resolved
    • The has_part relation has been implemented in the CC ontology (and will soon be used in BP also).
    • Several SourceForge items resolved
  • Manuscript in preparation for paper on the regulates relationships should resume soon (Midori & Jane so far; David, Chris and Tanya to join in)
  • Considering publication options for cross-product paper (extended version of ICBO xp work noted below)
  • Meetings
    • ICBO, Buffalo, NY July 20-23
    • David and Tanya attended the Society for Developmental Biology meeting (San Francisco, July 23-27), and have begun adding ontology terms based on discussions with other participants. They expect to add about 50-100 terms.
    • Organization under way for September GOC and SAB meetings

See monthly report in CVS for ontology statistics.

II. GO Editorial Office activities not represented in part I

  • OBO-Edit working group:
    • OBO-Edit 2.1 beta released for testing
    • See meeting minutes from July 1 and 16, and monthly report
    • ICBO presentations (see above)
  • Anything else
    • GO bibliography has 2797 entries

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