LEGO February 15, 2016
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Bluejeans
https://bluejeans.com/969313231
Agenda
- Software updates
- Documentation updates
- Google doc
- Videos
- Relations documentation
- Models review
- Insulin pathway - http://noctua.berkeleybop.org/editor/graph/gomodel:5667fdd400000696
- Where to add part_of relations?
- Adding has_input for binding annotations, e.g. receptor/agonist - ligand interactions. Necessary?
- Insulin pathway - http://noctua.berkeleybop.org/editor/graph/gomodel:5667fdd400000696
Minutes
- On call: David H., Guilia, Heiko, Helen, Kimberly, Seth, Stacia
- Software updates:
- See Seth's email from 2016-02-05; highlights include:
- Ability to clone an annoton
- Model status can now be Delete (replaced having to add DELETE text to model title)
- IDs now appear with labels, e.g. GO term name and ID both visible
- See Seth's email from 2016-02-05; highlights include:
- Documentation
- Would be good to formalize documentation updates, i.e. who, what, when
- Use github repo and text editor whenever possible?
- We need to schedule a quick github documentation tutorial to make sure everyone knows how to use it to edit documentation
- Videos - need updates as well
- Relations documentation - need Paul T.'s comments
- Models review
- Two outstanding issues wrt pathways
- part_of relations - adding all of these into the graph can make for a very cluttered view
- Ideas for better visualization? See https://github.com/geneontology/noctua/issues/15
- has_input relation - when to explicitly use this in the model vs when is it part of the logical definition of the chosen term
- for example, ligand/receptor interactions
- needs more discussion
- part_of relations - adding all of these into the graph can make for a very cluttered view
- Two outstanding issues wrt pathways